JAL-1667 updated test and internationalization messages

[jalview.git] / src / jalview / gui / PDBFetchPanel.java

diff --git a/src/jalview/gui/PDBFetchPanel.java b/src/jalview/gui/PDBFetchPanel.java
deleted file mode 100644 (file)
index 85231f7..0000000
--- a/src/jalview/gui/PDBFetchPanel.java
+++ /dev/null
@@ -1,146 +0,0 @@
-package jalview.gui;
-
-import jalview.jbgui.GPDBFetchPanel;
-import jalview.ws.dbsources.PDBRestClient;
-import jalview.ws.dbsources.PDBRestClient.PDBDocField;
-import jalview.ws.uimodel.PDBSearchRequest;
-import jalview.ws.uimodel.PDBSearchResponse;
-import jalview.ws.uimodel.PDBSearchResponse.PDBResponseSummary;
-
-import java.util.ArrayList;
-import java.util.Collections;
-import java.util.Comparator;
-import java.util.List;
-
-import javax.swing.DefaultListModel;
-import javax.swing.SwingUtilities;
-
-@SuppressWarnings("serial")
-public class PDBFetchPanel extends GPDBFetchPanel
-{
-  private SequenceFetcher seqFetcher;
-
-  public PDBFetchPanel()
-  {
-  }
-
-  public PDBFetchPanel(SequenceFetcher seqFetcher)
-  {
-    this();
-    this.seqFetcher = seqFetcher;
-  }
-
-  public static void main(String[] args)
-  {
-    SwingUtilities.invokeLater(new Runnable()
-    {
-      public void run()
-      {
-        new PDBFetchPanel();
-      }
-    });
-  }
-
-  @Override
-  public void searchStringAction()
-  {
-    boolean allowEmptySequence = false;
-    jListSearchResult.setModel(new DefaultListModel<PDBResponseSummary>());
-    mainFrame.setTitle("PDB Sequence Fetcher");
-    if (search.getText().trim().length() > 0)
-    {
-      long startTime = System.currentTimeMillis();
-      PDBRestClient pdbRestCleint = new PDBRestClient();
-      String searchTarget = ((PDBDocField) searchTargetOptions
-              .getSelectedItem()).getCode();
-
-      PDBSearchRequest request = new PDBSearchRequest();
-      request.setAllowEmptySeq(allowEmptySequence);
-      request.setResponseSize(100);
-      request.setFieldToSearchBy(searchTarget + ":");
-      request.setSearchTerm(search.getText());
-      List<PDBDocField> wantedFields = new ArrayList<PDBDocField>();
-      wantedFields.add(PDBDocField.MOLECULE_TYPE);
-      wantedFields.add(PDBDocField.PDB_ID);
-      wantedFields.add(PDBDocField.GENUS);
-      wantedFields.add(PDBDocField.GENE_NAME);
-      wantedFields.add(PDBDocField.TITLE);
-      request.setWantedFields(wantedFields);
-
-      PDBSearchResponse resultList = pdbRestCleint.executeRequest(request);
-
-      if (resultList.getSearchSummary() != null)
-      {
-        jListSearchResult.setModel(PDBSearchResponse
-                .getListModel(resultList.getSearchSummary()));
-      }
-      long endTime = System.currentTimeMillis();
-      mainFrame.setTitle("PDB Sequence Fetcher - "
-              + resultList.getItemsFound() + " results ("
-              + (endTime - startTime) + " milli secs)");
-    }
-
-  }
-
-  @Override
-  public void okActionPerformed()
-  {
-    importSelectedPDBSequencesToAlignment();
-  }
-
-
-  @Override
-  public void backActionPerformed()
-  {
-    System.out.println("back! pressed!");
-  }
-
-  @Override
-  public void cancelActionPerformed()
-  {
-    mainFrame.dispose();
-  }
-
-  private void importSelectedPDBSequencesToAlignment()
-  {
-    mainFrame.dispose();
-    StringBuilder selectedIds = new StringBuilder();
-    for (PDBResponseSummary dataSelected : jListSearchResult
-            .getSelectedValuesList())
-    {
-      selectedIds.append(";").append(dataSelected.getPdbId());
-    }
-    String ids = selectedIds.deleteCharAt(0).toString();
-    seqFetcher.textArea.setText(ids);
-    Thread worker = new Thread(seqFetcher);
-    worker.start();
-  }
-
-  public void populateSearchOptionComboBox()
-  {
-    List<PDBDocField> searchableTargets = new ArrayList<PDBDocField>();
-    searchableTargets.add(PDBDocField.PDB_ID);
-    searchableTargets.add(PDBDocField.PFAM_ACCESSION);
-    searchableTargets.add(PDBDocField.MOLECULE_TYPE);
-    searchableTargets.add(PDBDocField.MOLECULE_NAME);
-    searchableTargets.add(PDBDocField.UNIPROT_ACCESSION);
-    searchableTargets.add(PDBDocField.GENE_NAME);
-    searchableTargets.add(PDBDocField.GENUS);
-    searchableTargets.add(PDBDocField.ALL);
-
-    Collections.sort(searchableTargets, new Comparator<PDBDocField>()
-    {
-      @Override
-      public int compare(PDBDocField o1, PDBDocField o2)
-      {
-        return o1.getName().compareTo(o2.getName());
-      }
-    });
-
-    for (PDBDocField searchTarget : searchableTargets)
-    {
-      searchTargetOptions.addItem(searchTarget);
-    }
-  }
-
-}