updated to jalview 2.1 and begun ArchiveClient/VamsasClient/VamsasStore updates.

[jalview.git] / src / jalview / gui / PaintRefresher.java

diff --git a/src/jalview/gui/PaintRefresher.java b/src/jalview/gui/PaintRefresher.java
index e05f44d..29c71cf 100755 (executable)
--- a/src/jalview/gui/PaintRefresher.java
+++ b/src/jalview/gui/PaintRefresher.java
@@ -1,97 +1,100 @@
-/*\r
- * Jalview - A Sequence Alignment Editor and Viewer\r
- * Copyright (C) 2005 AM Waterhouse, J Procter, G Barton, M Clamp, S Searle\r
- *\r
- * This program is free software; you can redistribute it and/or\r
- * modify it under the terms of the GNU General Public License\r
- * as published by the Free Software Foundation; either version 2\r
- * of the License, or (at your option) any later version.\r
- *\r
- * This program is distributed in the hope that it will be useful,\r
- * but WITHOUT ANY WARRANTY; without even the implied warranty of\r
- * MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE.  See the\r
- * GNU General Public License for more details.\r
- *\r
- * You should have received a copy of the GNU General Public License\r
- * along with this program; if not, write to the Free Software\r
- * Foundation, Inc., 51 Franklin Street, Fifth Floor, Boston, MA  02110-1301, USA\r
- */\r
-package jalview.gui;\r
-\r
-import jalview.datamodel.*;\r
-\r
-import java.awt.*;\r
-\r
-import java.util.*;\r
-\r
-\r
-/**\r
- * DOCUMENT ME!\r
- *\r
- * @author $author$\r
- * @version $Revision$\r
- */\r
-public class PaintRefresher\r
-{\r
-    static Hashtable components = new Hashtable();\r
-\r
-    /**\r
-     * DOCUMENT ME!\r
-     *\r
-     * @param comp DOCUMENT ME!\r
-     * @param al DOCUMENT ME!\r
-     */\r
-    public static void Register(Component comp, AlignmentI al)\r
-    {\r
-        if (components.containsKey(al))\r
-        {\r
-            Vector comps = (Vector) components.get(al);\r
-            comps.addElement(comp);\r
-        }\r
-        else\r
-        {\r
-            Vector vcoms = new Vector();\r
-            vcoms.addElement(comp);\r
-            components.put(al, vcoms);\r
-        }\r
-    }\r
-\r
-    /**\r
-     * DOCUMENT ME!\r
-     *\r
-     * @param al DOCUMENT ME!\r
-     */\r
-    public static void Refresh(AlignmentI al)\r
-    {\r
-        Refresh(null, al);\r
-    }\r
-\r
-    /**\r
-     * DOCUMENT ME!\r
-     *\r
-     * @param c DOCUMENT ME!\r
-     * @param al DOCUMENT ME!\r
-     */\r
-    public static void Refresh(Component c, AlignmentI al)\r
-    {\r
-        Component temp;\r
-        Vector coms = (Vector) components.get(al);\r
-        Enumeration e = coms.elements();\r
-\r
-        while (e.hasMoreElements())\r
-        {\r
-            temp = (Component) e.nextElement();\r
-\r
-            if (!temp.isValid())\r
-            {\r
-                coms.removeElement(temp);\r
-            }\r
-            else if (temp == c)\r
-            {\r
-                continue;\r
-            }\r
-            else\r
-                temp.repaint();\r
-        }\r
-    }\r
-}\r
+/*
+ * Jalview - A Sequence Alignment Editor and Viewer
+ * Copyright (C) 2006 AM Waterhouse, J Procter, G Barton, M Clamp, S Searle
+ *
+ * This program is free software; you can redistribute it and/or
+ * modify it under the terms of the GNU General Public License
+ * as published by the Free Software Foundation; either version 2
+ * of the License, or (at your option) any later version.
+ *
+ * This program is distributed in the hope that it will be useful,
+ * but WITHOUT ANY WARRANTY; without even the implied warranty of
+ * MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE.  See the
+ * GNU General Public License for more details.
+ *
+ * You should have received a copy of the GNU General Public License
+ * along with this program; if not, write to the Free Software
+ * Foundation, Inc., 51 Franklin Street, Fifth Floor, Boston, MA  02110-1301, USA
+ */
+package jalview.gui;
+
+import jalview.datamodel.*;
+
+import java.awt.*;
+
+import java.util.*;
+
+
+/**
+ * DOCUMENT ME!
+ *
+ * @author $author$
+ * @version $Revision$
+ */
+public class PaintRefresher
+{
+    static Hashtable components = new Hashtable();
+
+    /**
+     * DOCUMENT ME!
+     *
+     * @param comp DOCUMENT ME!
+     * @param al DOCUMENT ME!
+     */
+    public static void Register(Component comp, AlignmentI al)
+    {
+        if (components.containsKey(al))
+        {
+            Vector comps = (Vector) components.get(al);
+            comps.addElement(comp);
+        }
+        else
+        {
+            Vector vcoms = new Vector();
+            vcoms.addElement(comp);
+            components.put(al, vcoms);
+        }
+    }
+
+    /**
+     * DOCUMENT ME!
+     *
+     * @param al DOCUMENT ME!
+     */
+    public static void Refresh(AlignmentI al)
+    {
+        Refresh(null, al);
+    }
+
+    /**
+     * DOCUMENT ME!
+     *
+     * @param c DOCUMENT ME!
+     * @param al DOCUMENT ME!
+     */
+    public static void Refresh(Component c, AlignmentI al)
+    {
+        Component temp;
+        Vector coms = (Vector) components.get(al);
+        if(coms==null)
+          return;
+
+        Enumeration e = coms.elements();
+
+        while (e.hasMoreElements())
+        {
+            temp = (Component) e.nextElement();
+
+            if (!temp.isValid())
+            {
+                coms.removeElement(temp);
+            }
+            else if (temp == c)
+            {
+                continue;
+            }
+            else
+                temp.repaint();
+        }
+    }
+}