/*\r
* Jalview - A Sequence Alignment Editor and Viewer\r
- * Copyright (C) 2005 AM Waterhouse, J Procter, G Barton, M Clamp, S Searle\r
+ * Copyright (C) 2006 AM Waterhouse, J Procter, G Barton, M Clamp, S Searle\r
*\r
* This program is free software; you can redistribute it and/or\r
* modify it under the terms of the GNU General Public License\r
*/\r
package jalview.gui;\r
\r
-import java.util.*;\r
+import jalview.datamodel.*;\r
\r
import java.awt.*;\r
\r
+import java.util.*;\r
+\r
+\r
+/**\r
+ * DOCUMENT ME!\r
+ *\r
+ * @author $author$\r
+ * @version $Revision$\r
+ */\r
public class PaintRefresher\r
{\r
- static Vector components = new Vector();\r
+ static Hashtable components;\r
\r
- public static void Register(Component c)\r
- {\r
- if (!components.contains(c))\r
+ /**\r
+ * DOCUMENT ME!\r
+ *\r
+ * @param comp DOCUMENT ME!\r
+ * @param al DOCUMENT ME!\r
+ */\r
+ public static void Register(Component comp, String seqSetId)\r
{\r
- components.add(c);\r
+ if (components == null)\r
+ components = new Hashtable();\r
+\r
+ if (components.containsKey(seqSetId))\r
+ {\r
+ Vector comps = (Vector) components.get(seqSetId);\r
+ if(!comps.contains(comp))\r
+ {\r
+ comps.addElement(comp);\r
+ }\r
+ }\r
+ else\r
+ {\r
+ Vector vcoms = new Vector();\r
+ vcoms.addElement(comp);\r
+ components.put(seqSetId, vcoms);\r
+ }\r
}\r
- else\r
+\r
+ public static void RemoveComponent(Component comp)\r
{\r
- components.remove(c);\r
+ if (components == null)\r
+ return;\r
+\r
+ Enumeration en = components.keys();\r
+ while(en.hasMoreElements())\r
+ {\r
+ String id = en.nextElement().toString();\r
+ Vector comps = (Vector) components.get(id);\r
+ comps.remove(comp);\r
+ if(comps.size()==0)\r
+ {\r
+ components.remove(id);\r
+ }\r
+ }\r
}\r
- }\r
\r
- public static void Refresh(Component c)\r
- {\r
- Component temp;\r
- Enumeration e = components.elements();\r
+ public static void Refresh(Component source, String id)\r
+ {\r
+ Refresh( source, id, false, false);\r
+ }\r
\r
- while (e.hasMoreElements())\r
+ public static void Refresh(Component source,\r
+ String id,\r
+ boolean alignmentChanged,\r
+ boolean validateSequences)\r
{\r
- temp = (Component) e.nextElement();\r
+ if (components == null)\r
+ return;\r
+\r
+ Component comp;\r
+ Vector comps = (Vector) components.get(id);\r
\r
- if (!temp.isValid())\r
+ if(comps==null)\r
{\r
- components.removeElement(temp);\r
+ return;\r
}\r
- else if (temp == c)\r
+\r
+ Enumeration e = comps.elements();\r
+ while (e.hasMoreElements())\r
{\r
- continue;\r
+ comp = (Component) e.nextElement();\r
+\r
+ if(comp==source)\r
+ {\r
+ continue;\r
+ }\r
+\r
+ if (!comp.isValid())\r
+ {\r
+ comps.removeElement(comp);\r
+ }\r
+ else if(validateSequences\r
+ && comp instanceof AlignmentPanel\r
+ && source instanceof AlignmentPanel )\r
+ {\r
+ validateSequences( ((AlignmentPanel)source).av.alignment,\r
+ ((AlignmentPanel)comp).av.alignment);\r
+ }\r
+\r
+ if(comp instanceof AlignmentPanel && alignmentChanged)\r
+ {\r
+ ((AlignmentPanel)comp).alignmentChanged();\r
+ }\r
+\r
+ comp.repaint();\r
}\r
+ }\r
+\r
+ static void validateSequences(AlignmentI source, AlignmentI comp)\r
+ {\r
+ SequenceI[] a1;\r
+ if(source.getHiddenSequences().getSize()>0)\r
+ a1 = source.getHiddenSequences().getFullAlignment().getSequencesArray();\r
+ else\r
+ a1 = source.getSequencesArray();\r
\r
- temp.repaint();\r
+ SequenceI[] a2;\r
+ if (comp.getHiddenSequences().getSize() > 0)\r
+ a2 = comp.getHiddenSequences().getFullAlignment().getSequencesArray();\r
+ else\r
+ a2 = comp.getSequencesArray();\r
+\r
+ int i, iSize=a1.length, j, jSize=a2.length;\r
+\r
+ if(iSize == jSize)\r
+ return;\r
+\r
+ boolean exists = false;\r
+ for(i=0; i<iSize; i++)\r
+ {\r
+ exists = false;\r
+\r
+ for(j=0; j<jSize; j++)\r
+ if (a2[j]==a1[i] )\r
+ {\r
+ exists = true;\r
+ break;\r
+ }\r
+\r
+ if(!exists)\r
+ {\r
+ if (i < jSize)\r
+ comp.getSequences().insertElementAt(a1[i], i);\r
+ else\r
+ comp.addSequence(a1[i]);\r
+\r
+ jSize++;\r
+\r
+ if (comp.getHiddenSequences().getSize() > 0)\r
+ a2 = comp.getHiddenSequences().getFullAlignment().getSequencesArray();\r
+ else\r
+ a2 = comp.getSequencesArray();\r
+ }\r
+ }\r
+\r
+ iSize=a1.length;\r
+ jSize=a2.length;\r
+\r
+ for(j=0; j<jSize; j++)\r
+ {\r
+ exists = false;\r
+ for(i=0; i<iSize; i++)\r
+ {\r
+ if (a2[j]==a1[i])\r
+ {\r
+ exists = true;\r
+ break;\r
+ }\r
+ }\r
+\r
+ if(!exists)\r
+ {\r
+ comp.deleteSequence(a2[j]);\r
+ }\r
+ }\r
+ }\r
+\r
+ static AlignmentPanel [] getAssociatedPanels(String id)\r
+ {\r
+ Vector comps = (Vector)components.get(id);\r
+ Vector tmp = new Vector();\r
+ int i, iSize = comps.size();\r
+ for (i = 0; i < iSize; i++)\r
+ {\r
+ if (comps.elementAt(i) instanceof AlignmentPanel)\r
+ {\r
+ tmp.addElement(((AlignmentPanel)comps.elementAt(i)));\r
+ }\r
+ }\r
+ AlignmentPanel [] result = new AlignmentPanel[tmp.size()];\r
+ tmp.toArray(result);\r
+\r
+ return result;\r
}\r
- }\r
+\r
}\r
git://source.jalview.org / jalview.git / blobdiff