sequences are private in SequenceGroup

[jalview.git] / src / jalview / gui / PairwiseAlignPanel.java

diff --git a/src/jalview/gui/PairwiseAlignPanel.java b/src/jalview/gui/PairwiseAlignPanel.java
index 76c75cb..5e719f2 100755 (executable)
--- a/src/jalview/gui/PairwiseAlignPanel.java
+++ b/src/jalview/gui/PairwiseAlignPanel.java
@@ -52,7 +52,7 @@ public class PairwiseAlignPanel extends GPairwiseAlignPanel
 \r
         Vector selsubset = new Vector();\r
 \r
-        for (int i = 0, j = av.getSelectionGroup().getSize(); i < j; i++)\r
+        for (int i = 0, j = av.getSelectionGroup().getSize(false); i < j; i++)\r
         {\r
             if (av.getAlignment().getSequences().contains(av.getSelectionGroup()\r
                                                                 .getSequenceAt(i)))\r