import javax.swing.JColorChooser;
import javax.swing.JMenu;
import javax.swing.JMenuItem;
-import javax.swing.JOptionPane;
import javax.swing.JPopupMenu;
import javax.swing.JRadioButtonMenuItem;
colours.add(strandColour);
colours.add(turnColour);
colours.add(buriedColour);
- colours.add(abovePIDColour);
colours.add(userDefinedColour);
colours.add(PIDColour);
colours.add(BLOSUM62Colour);
noColourmenuItem.setSelected(true);
}
- if (sg.cs != null && sg.cs.conservationApplied())
+ if (sg.cs != null)
{
+ if (sg.cs.conservationApplied())
+ {
conservationMenuItem.setSelected(true);
+ }
+ if (sg.cs.getThreshold() > 0)
+ {
+ abovePIDColour.setSelected(true);
+ }
}
displayNonconserved.setSelected(sg.getShowNonconserved());
showText.setSelected(sg.getDisplayText());