startup file added

[jalview.git] / src / jalview / gui / Preferences.java

diff --git a/src/jalview/gui/Preferences.java b/src/jalview/gui/Preferences.java
index 075065e..1553de5 100755 (executable)
--- a/src/jalview/gui/Preferences.java
+++ b/src/jalview/gui/Preferences.java
@@ -2,12 +2,14 @@ package jalview.gui;
 \r
 import jalview.jbgui.*;\r
 import jalview.schemes.*;\r
+import jalview.io.*;\r
 \r
 import jalview.bin.Cache;\r
 import javax.swing.*;\r
 import java.awt.event.ActionEvent;\r
 import java.awt.*;\r
 \r
+\r
 public class Preferences extends GPreferences\r
 {\r
   static boolean preferencesLoaded=false;\r
@@ -23,6 +25,8 @@ public class Preferences extends GPreferences
   public static String fontStyle;\r
   public static char gapSymbol='-';\r
   public static String defaultColour=null;\r
+  public static boolean showStartupFile=true;\r
+  public static String startupFile = "http://www.compbio.dundee.ac.uk/~andrew/jalviewTEST/fasta";\r
 \r
   JInternalFrame frame;\r
 \r
@@ -36,7 +40,6 @@ public class Preferences extends GPreferences
   if(string!=null)\r
     showFullscreen = Boolean.valueOf(string).booleanValue();\r
 \r
-\r
   string = Cache.getProperty("SHOW_ANNOTATIONS");\r
       if(string!=null)\r
     showAnnotation = Boolean.valueOf(string).booleanValue();\r
@@ -67,6 +70,13 @@ public class Preferences extends GPreferences
   if(string!=null)\r
       defaultColour = string;\r
 \r
+  string = Cache.getProperty("STARTUP_FILE");\r
+    if(string!=null)\r
+      startupFile = string;\r
+\r
+  string = Cache.getProperty("SHOW_STARTUP_FILE");\r
+        if(string!=null)\r
+      showStartupFile = Boolean.valueOf(string).booleanValue();\r
 \r
       preferencesLoaded = true;\r
   }\r
@@ -78,7 +88,7 @@ public class Preferences extends GPreferences
 \r
     frame = new JInternalFrame();\r
     frame.setContentPane(this);\r
-    Desktop.addInternalFrame(frame, "Preferences", 480,350 );\r
+    Desktop.addInternalFrame(frame, "Preferences", 480,390 );\r
 \r
     fullID.setSelected(showFullId);\r
     String string = Cache.getProperty("SHOW_FULLSCREEN");\r
@@ -126,6 +136,9 @@ public class Preferences extends GPreferences
 \r
    gapSymbolCB.setSelectedItem( gapSymbol+"" );\r
 \r
+   startupCheckbox.setSelected(showStartupFile);\r
+   startupFileTextfield.setText(startupFile);\r
+\r
   }\r
 \r
   public void ok_actionPerformed(ActionEvent e)\r
@@ -141,6 +154,8 @@ public class Preferences extends GPreferences
     fontName = fontNameCB.getSelectedItem().toString();\r
     fontSize = fontSizeCB.getSelectedItem().toString();\r
     fontStyle = fontStyleCB.getSelectedItem().toString();\r
+    startupFile = startupFileTextfield.getText();\r
+    showStartupFile = startupCheckbox.isSelected();\r
 \r
     Cache.setProperty("SHOW_FULL_ID", Boolean.toString(showFullId));\r
     Cache.setProperty("SHOW_FULLSCREEN", Boolean.toString( showFullscreen ) );\r
@@ -157,12 +172,33 @@ public class Preferences extends GPreferences
     Cache.setProperty("FONT_STYLE", fontStyle);\r
     Cache.setProperty("FONT_SIZE", fontSize);\r
 \r
+    Cache.setProperty("STARTUP_FILE", startupFile);\r
+    Cache.setProperty("SHOW_STARTUP_FILE", Boolean.toString(showStartupFile));\r
+\r
+\r
+\r
     try    {\r
       frame.setClosed(true);\r
     }    catch (Exception ex)  {}\r
 \r
   }\r
 \r
+  public void startupFileTextfield_mouseClicked()\r
+  {\r
+    JalviewFileChooser chooser = new JalviewFileChooser(jalview.bin.Cache.getProperty("LAST_DIRECTORY"),\r
+        new String[]{"fa, fasta, fastq", "aln",  "pfam", "msf", "pir","blc","jar"},\r
+        new String[]{"Fasta", "Clustal", "PFAM", "MSF", "PIR", "BLC", "Jalview"}\r
+       ,null);\r
+   chooser.setFileView(new JalviewFileView());\r
+   chooser.setDialogTitle("Select startup file");\r
+   int value = chooser.showOpenDialog(this);\r
+   if(value == JalviewFileChooser.APPROVE_OPTION)\r
+   {\r
+     startupFileTextfield.setText( chooser.getSelectedFile().getAbsolutePath() );\r
+   }\r
+  }\r
+\r
+\r
   public void cancel_actionPerformed(ActionEvent e)\r
   {\r
     try{\r