(allowCancel) ? JOptionPane.YES_NO_CANCEL_OPTION
: JOptionPane.YES_NO_OPTION,
JOptionPane.QUESTION_MESSAGE);
+ // now, ask the desktop to relayer any external windows that might have been obsured
+ if (Desktop.instance!=null)
+ {
+ Desktop.instance.relayerWindows();
+ }
+ // and finish parsing the result
jalview.bin.Cache.log.debug("Got response : " + reply);
if (reply == JOptionPane.YES_OPTION)
{