/*\r
* Jalview - A Sequence Alignment Editor and Viewer\r
- * Copyright (C) 2005 AM Waterhouse, J Procter, G Barton, M Clamp, S Searle\r
+ * Copyright (C) 2007 AM Waterhouse, J Procter, G Barton, M Clamp, S Searle\r
*\r
* This program is free software; you can redistribute it and/or\r
* modify it under the terms of the GNU General Public License\r
\r
import jalview.datamodel.*;\r
import jalview.math.*;\r
-import jalview.util.*;\r
\r
+/**\r
+ * DOCUMENT ME!\r
+ *\r
+ * @author $author$\r
+ * @version $Revision$\r
+ */\r
public class RotatableCanvas\r
extends JPanel implements MouseListener,\r
MouseMotionListener, KeyListener\r
-//RubberbandListener,\r
-//SequenceSelectionListener\r
{\r
RotatableMatrix idmat = new RotatableMatrix(3, 3);\r
RotatableMatrix objmat = new RotatableMatrix(3, 3);\r
int recty2;\r
float scalefactor = 1;\r
AlignViewport av;\r
+ AlignmentPanel ap;\r
+ boolean showLabels = false;\r
+ Color bgColour = Color.black;\r
+ boolean applyToAllViews = false;\r
\r
// Controller controller;\r
- public RotatableCanvas(AlignViewport av, Vector points, int npoint)\r
+ public RotatableCanvas(AlignmentPanel ap)\r
+ {\r
+ this.av = ap.av;\r
+ this.ap = ap;\r
+\r
+ addMouseWheelListener(new MouseWheelListener()\r
+ {\r
+ public void mouseWheelMoved(MouseWheelEvent e)\r
+ {\r
+ if (e.getWheelRotation() > 0)\r
+ {\r
+ scale = (float) (scale * 1.1);\r
+ repaint();\r
+ }\r
+\r
+ else\r
+ {\r
+ scale = (float) (scale * 0.9);\r
+ repaint();\r
+ }\r
+ }\r
+ });\r
+\r
+ }\r
+\r
+ public void showLabels(boolean b)\r
+ {\r
+ showLabels = b;\r
+ repaint();\r
+ }\r
+\r
+ public void setPoints(Vector points, int npoint)\r
{\r
this.points = points;\r
this.npoint = npoint;\r
- this.av = av;\r
ToolTipManager.sharedInstance().registerComponent(this);\r
- PaintRefresher.Register(this, av.alignment);\r
+ ToolTipManager.sharedInstance().setInitialDelay(0);\r
+ ToolTipManager.sharedInstance().setDismissDelay(10000);\r
\r
- //\r
prefsize = getPreferredSize();\r
orig = new float[npoint][3];\r
\r
\r
scale = findScale();\r
\r
- // System.out.println("Scale factor = " + scale);\r
addMouseListener(this);\r
- addKeyListener(this);\r
\r
- // if (getParent() != null) {\r
- // getParent().addKeyListener(this);\r
- //}\r
addMouseMotionListener(this);\r
\r
- // Add rubberband\r
- // rubberband = new RubberbandRectangle(this);\r
- // rubberband.setActive(true);\r
- // rubberband.addListener(this);\r
}\r
\r
- /* public boolean handleSequenceSelectionEvent(SequenceSelectionEvent evt) {\r
- redrawneeded = true;\r
- repaint();\r
- return true;\r
- }\r
-\r
- public void removeNotify() {\r
- controller.removeListener(this);\r
- super.removeNotify();\r
- }*/\r
public void initAxes()\r
{\r
for (int i = 0; i < 3; i++)\r
}\r
}\r
\r
+ /**\r
+ * DOCUMENT ME!\r
+ */\r
public void findWidth()\r
{\r
max = new float[3];\r
//System.out.println("Maxwidth = " + maxwidth);\r
}\r
\r
+ /**\r
+ * DOCUMENT ME!\r
+ *\r
+ * @return DOCUMENT ME!\r
+ */\r
public float findScale()\r
{\r
int dim;\r
return (float) ( (dim * scalefactor) / (2 * maxwidth));\r
}\r
\r
+ /**\r
+ * DOCUMENT ME!\r
+ */\r
public void findCentre()\r
{\r
//Find centre coordinate\r
//System.out.println("Centre z " + centre[2]);\r
}\r
\r
+ /**\r
+ * DOCUMENT ME!\r
+ *\r
+ * @return DOCUMENT ME!\r
+ */\r
public Dimension getPreferredSize()\r
{\r
if (prefsize != null)\r
}\r
}\r
\r
+ /**\r
+ * DOCUMENT ME!\r
+ *\r
+ * @return DOCUMENT ME!\r
+ */\r
public Dimension getMinimumSize()\r
{\r
return getPreferredSize();\r
}\r
\r
- public void paintComponent(Graphics g)\r
+ /**\r
+ * DOCUMENT ME!\r
+ *\r
+ * @param g DOCUMENT ME!\r
+ */\r
+ public void paintComponent(Graphics g1)\r
{\r
- //Only create the image at the beginning -\r
- if ( (img == null) || (prefsize.width != getWidth()) ||\r
- (prefsize.height != getHeight()))\r
- {\r
- prefsize.width = getWidth();\r
- prefsize.height = getHeight();\r
\r
- scale = findScale();\r
+ Graphics2D g = (Graphics2D) g1;\r
\r
- // System.out.println("New scale = " + scale);\r
- img = createImage(getWidth(), getHeight());\r
- ig = img.getGraphics();\r
+ g.setRenderingHint(RenderingHints.KEY_ANTIALIASING,\r
+ RenderingHints.VALUE_ANTIALIAS_ON);\r
+ if (points == null)\r
+ {\r
+ g.setFont(new Font("Verdana", Font.PLAIN, 18));\r
+ g.drawString("Calculating PCA....", 20, getHeight() / 2);\r
}\r
+ else\r
+ {\r
+ //Only create the image at the beginning -\r
+ if ( (img == null) || (prefsize.width != getWidth()) ||\r
+ (prefsize.height != getHeight()))\r
+ {\r
+ prefsize.width = getWidth();\r
+ prefsize.height = getHeight();\r
\r
- drawBackground(ig, Color.black);\r
- drawScene(ig);\r
+ scale = findScale();\r
\r
- if (drawAxes == true)\r
- {\r
- drawAxes(ig);\r
- }\r
+ // System.out.println("New scale = " + scale);\r
+ img = createImage(getWidth(), getHeight());\r
+ ig = img.getGraphics();\r
+ }\r
\r
- g.drawImage(img, 0, 0, this);\r
+ drawBackground(ig, bgColour);\r
+ drawScene(ig);\r
+\r
+ if (drawAxes == true)\r
+ {\r
+ drawAxes(ig);\r
+ }\r
+\r
+ g.drawImage(img, 0, 0, this);\r
+ }\r
}\r
\r
+ /**\r
+ * DOCUMENT ME!\r
+ *\r
+ * @param g DOCUMENT ME!\r
+ */\r
public void drawAxes(Graphics g)\r
{\r
+\r
g.setColor(Color.yellow);\r
\r
for (int i = 0; i < 3; i++)\r
}\r
}\r
\r
+ /**\r
+ * DOCUMENT ME!\r
+ *\r
+ * @param g DOCUMENT ME!\r
+ * @param col DOCUMENT ME!\r
+ */\r
public void drawBackground(Graphics g, Color col)\r
{\r
g.setColor(col);\r
g.fillRect(0, 0, prefsize.width, prefsize.height);\r
}\r
\r
- public void drawScene(Graphics g)\r
+ /**\r
+ * DOCUMENT ME!\r
+ *\r
+ * @param g DOCUMENT ME!\r
+ */\r
+ public void drawScene(Graphics g1)\r
{\r
- boolean darker = false;\r
+\r
+ Graphics2D g = (Graphics2D) g1;\r
+\r
+ g.setRenderingHint(RenderingHints.KEY_ANTIALIASING,\r
+ RenderingHints.VALUE_ANTIALIAS_ON);\r
\r
int halfwidth = getWidth() / 2;\r
int halfheight = getHeight() / 2;\r
halfheight;\r
float z = sp.coord[1] - centre[2];\r
\r
- if (sp.sequence.getColor() == Color.black)\r
+ if (av.getSequenceColour(sp.sequence) == Color.black)\r
{\r
g.setColor(Color.white);\r
}\r
else\r
{\r
- g.setColor(sp.sequence.getColor());\r
+ g.setColor(av.getSequenceColour(sp.sequence));\r
}\r
\r
if (av.getSelectionGroup() != null)\r
{\r
- if (av.getSelectionGroup().sequences.contains(\r
+ if (av.getSelectionGroup().getSequences(null).contains(\r
( (SequencePoint) points.elementAt(i)).sequence))\r
{\r
g.setColor(Color.gray);\r
}\r
\r
g.fillRect(x - 3, y - 3, 6, 6);\r
- g.setColor(Color.red);\r
+ if (showLabels)\r
+ {\r
+ g.setColor(Color.red);\r
+ g.drawString( ( (SequencePoint) points.elementAt(i)).sequence.\r
+ getName(),\r
+ x - 3, y - 4);\r
+ }\r
}\r
\r
// //Now the rectangle\r
// }\r
}\r
\r
+ /**\r
+ * DOCUMENT ME!\r
+ *\r
+ * @return DOCUMENT ME!\r
+ */\r
public Dimension minimumsize()\r
{\r
return prefsize;\r
}\r
\r
+ /**\r
+ * DOCUMENT ME!\r
+ *\r
+ * @return DOCUMENT ME!\r
+ */\r
public Dimension preferredsize()\r
{\r
return prefsize;\r
}\r
\r
+ /**\r
+ * DOCUMENT ME!\r
+ *\r
+ * @param evt DOCUMENT ME!\r
+ */\r
public void keyTyped(KeyEvent evt)\r
{\r
}\r
\r
+ /**\r
+ * DOCUMENT ME!\r
+ *\r
+ * @param evt DOCUMENT ME!\r
+ */\r
public void keyReleased(KeyEvent evt)\r
{\r
}\r
\r
+ /**\r
+ * DOCUMENT ME!\r
+ *\r
+ * @param evt DOCUMENT ME!\r
+ */\r
public void keyPressed(KeyEvent evt)\r
{\r
- requestFocus();\r
-\r
if (evt.getKeyCode() == KeyEvent.VK_UP)\r
{\r
scalefactor = (float) (scalefactor * 1.1);\r
repaint();\r
}\r
\r
- public void printPoints()\r
- {\r
- for (int i = 0; i < npoint; i++)\r
- {\r
- SequencePoint sp = (SequencePoint) points.elementAt(i);\r
- Format.print(System.out, "%5d ", i);\r
-\r
- for (int j = 0; j < 3; j++)\r
- {\r
- Format.print(System.out, "%13.3f ", sp.coord[j]);\r
- }\r
-\r
- System.out.println();\r
- }\r
- }\r
-\r
+ /**\r
+ * DOCUMENT ME!\r
+ *\r
+ * @param evt DOCUMENT ME!\r
+ */\r
public void mouseClicked(MouseEvent evt)\r
{\r
}\r
\r
+ /**\r
+ * DOCUMENT ME!\r
+ *\r
+ * @param evt DOCUMENT ME!\r
+ */\r
public void mouseEntered(MouseEvent evt)\r
{\r
}\r
\r
+ /**\r
+ * DOCUMENT ME!\r
+ *\r
+ * @param evt DOCUMENT ME!\r
+ */\r
public void mouseExited(MouseEvent evt)\r
{\r
}\r
\r
+ /**\r
+ * DOCUMENT ME!\r
+ *\r
+ * @param evt DOCUMENT ME!\r
+ */\r
public void mouseReleased(MouseEvent evt)\r
{\r
}\r
\r
+ /**\r
+ * DOCUMENT ME!\r
+ *\r
+ * @param evt DOCUMENT ME!\r
+ */\r
public void mousePressed(MouseEvent evt)\r
{\r
int x = evt.getX();\r
\r
if (found != null)\r
{\r
- if (av.getSelectionGroup() != null)\r
- {\r
- av.getSelectionGroup().addOrRemove(found, true);\r
- PaintRefresher.Refresh(this, av.alignment);\r
- }\r
- else\r
+ AlignmentPanel[] aps = getAssociatedPanels();\r
+\r
+ for (int a = 0; a < aps.length; a++)\r
{\r
- av.setSelectionGroup(new SequenceGroup());\r
- av.getSelectionGroup().addOrRemove(found, true);\r
- av.getSelectionGroup().setEndRes(av.alignment.getWidth());\r
+ if (aps[a].av.getSelectionGroup() != null)\r
+ {\r
+ aps[a].av.getSelectionGroup().addOrRemove(found, true);\r
+ }\r
+ else\r
+ {\r
+ aps[a].av.setSelectionGroup(new SequenceGroup());\r
+ aps[a].av.getSelectionGroup().addOrRemove(found, true);\r
+ aps[a].av.getSelectionGroup().setEndRes(\r
+ aps[a].av.alignment.getWidth() - 1);\r
+ }\r
}\r
+\r
+ PaintRefresher.Refresh(this, av.getSequenceSetId());\r
}\r
\r
repaint();\r
}\r
}\r
\r
+ /**\r
+ * DOCUMENT ME!\r
+ *\r
+ * @param evt DOCUMENT ME!\r
+ */\r
public void mouseDragged(MouseEvent evt)\r
{\r
mx = evt.getX();\r
}\r
}\r
\r
+ /**\r
+ * DOCUMENT ME!\r
+ *\r
+ * @param x1 DOCUMENT ME!\r
+ * @param y1 DOCUMENT ME!\r
+ * @param x2 DOCUMENT ME!\r
+ * @param y2 DOCUMENT ME!\r
+ */\r
public void rectSelect(int x1, int y1, int x2, int y2)\r
{\r
- boolean changedSel = false;\r
-\r
for (int i = 0; i < npoint; i++)\r
{\r
SequencePoint sp = (SequencePoint) points.elementAt(i);\r
{\r
if (av != null)\r
{\r
- if (!av.getSelectionGroup().sequences.contains(sp.sequence))\r
+ if (!av.getSelectionGroup().getSequences(null).contains(sp.sequence))\r
{\r
- changedSel = true;\r
av.getSelectionGroup().addSequence(sp.sequence, true);\r
}\r
}\r
// }\r
}\r
\r
+ /**\r
+ * DOCUMENT ME!\r
+ *\r
+ * @param x DOCUMENT ME!\r
+ * @param y DOCUMENT ME!\r
+ *\r
+ * @return DOCUMENT ME!\r
+ */\r
public SequenceI findPoint(int x, int y)\r
{\r
int halfwidth = getWidth() / 2;\r
}\r
}\r
\r
- /* public boolean handleRubberbandEvent(RubberbandEvent evt) {\r
- System.out.println("Rubberband handler called in RotatableCanvas with " +\r
- evt.getBounds());\r
-\r
- Rubberband rb = (Rubberband)evt.getSource();\r
-\r
- // Clear the current selection (instance variable)\r
- //if ((rb.getModifiers() & Event.SHIFT_MASK) == 0) {\r
- // clearSelection();\r
- //}\r
-\r
- if (rb.getComponent() == this) {\r
- Rectangle bounds = evt.getBounds();\r
- rectSelect(bounds.x,bounds.y,bounds.x+bounds.width,bounds.y+bounds.height);\r
- }\r
-\r
- redrawneeded = true;\r
- paint(this.getGraphics());\r
-\r
- return true;\r
- }*/\r
+ AlignmentPanel[] getAssociatedPanels()\r
+ {\r
+ if (applyToAllViews)\r
+ {\r
+ return PaintRefresher.getAssociatedPanels(av.getSequenceSetId());\r
+ }\r
+ else\r
+ {\r
+ return new AlignmentPanel[]\r
+ {\r
+ ap};\r
+ }\r
+ }\r
}\r
git://source.jalview.org / jalview.git / blobdiff