sequences are private in SequenceGroup

[jalview.git] / src / jalview / gui / RotatableCanvas.java

diff --git a/src/jalview/gui/RotatableCanvas.java b/src/jalview/gui/RotatableCanvas.java
index fc72b4b..8af3d65 100755 (executable)
--- a/src/jalview/gui/RotatableCanvas.java
+++ b/src/jalview/gui/RotatableCanvas.java
@@ -411,7 +411,7 @@ public class RotatableCanvas extends JPanel implements MouseListener,
 \r
             if (av.getSelectionGroup() != null)\r
             {\r
-                if (av.getSelectionGroup().sequences.contains(\r
+                if (av.getSelectionGroup().getSequences(false).contains(\r
                             ((SequencePoint) points.elementAt(i)).sequence))\r
                 {\r
                     g.setColor(Color.gray);\r
@@ -509,24 +509,6 @@ public class RotatableCanvas extends JPanel implements MouseListener,
         repaint();\r
     }\r
 \r
-    /**\r
-     * DOCUMENT ME!\r
-     */\r
-    public void printPoints()\r
-    {\r
-        for (int i = 0; i < npoint; i++)\r
-        {\r
-            SequencePoint sp = (SequencePoint) points.elementAt(i);\r
-            Format.print(System.out, "%5d ", i);\r
-\r
-            for (int j = 0; j < 3; j++)\r
-            {\r
-                Format.print(System.out, "%13.3f  ", sp.coord[j]);\r
-            }\r
-\r
-            System.out.println();\r
-        }\r
-    }\r
 \r
     /**\r
      * DOCUMENT ME!\r
@@ -687,8 +669,6 @@ public class RotatableCanvas extends JPanel implements MouseListener,
      */\r
     public void rectSelect(int x1, int y1, int x2, int y2)\r
     {\r
-        boolean changedSel = false;\r
-\r
         for (int i = 0; i < npoint; i++)\r
         {\r
             SequencePoint sp = (SequencePoint) points.elementAt(i);\r
@@ -701,9 +681,8 @@ public class RotatableCanvas extends JPanel implements MouseListener,
             {\r
                 if (av != null)\r
                 {\r
-                    if (!av.getSelectionGroup().sequences.contains(sp.sequence))\r
+                    if (!av.getSelectionGroup().getSequences(false).contains(sp.sequence))\r
                     {\r
-                        changedSel = true;\r
                         av.getSelectionGroup().addSequence(sp.sequence, true);\r
                     }\r
                 }\r