JAL-4134 repaint the tree or alignment view(s) when column selections change

[jalview.git] / src / jalview / gui / ScalePanel.java

diff --git a/src/jalview/gui/ScalePanel.java b/src/jalview/gui/ScalePanel.java
index ca3faf8..422601d 100755 (executable)
--- a/src/jalview/gui/ScalePanel.java
+++ b/src/jalview/gui/ScalePanel.java
@@ -20,16 +20,6 @@
  */
 package jalview.gui;
 
-import jalview.datamodel.ColumnSelection;
-import jalview.datamodel.HiddenColumns;
-import jalview.datamodel.SequenceGroup;
-import jalview.renderer.ScaleRenderer;
-import jalview.renderer.ScaleRenderer.ScaleMark;
-import jalview.util.MessageManager;
-import jalview.util.Platform;
-import jalview.viewmodel.ViewportListenerI;
-import jalview.viewmodel.ViewportRanges;
-
 import java.awt.Color;
 import java.awt.FontMetrics;
 import java.awt.Graphics;
@@ -50,6 +40,16 @@ import javax.swing.JPanel;
 import javax.swing.JPopupMenu;
 import javax.swing.ToolTipManager;
 
+import jalview.datamodel.ColumnSelection;
+import jalview.datamodel.HiddenColumns;
+import jalview.datamodel.SequenceGroup;
+import jalview.renderer.ScaleRenderer;
+import jalview.renderer.ScaleRenderer.ScaleMark;
+import jalview.util.MessageManager;
+import jalview.util.Platform;
+import jalview.viewmodel.ViewportListenerI;
+import jalview.viewmodel.ViewportRanges;
+
 /**
  * The panel containing the sequence ruler (when not in wrapped mode), and
  * supports a range of mouse operations to select, hide or reveal columns.
@@ -269,6 +269,7 @@ public class ScalePanel extends JPanel
     }
     av.setSelectionGroup(sg);
     ap.paintAlignment(false, false);
+    PaintRefresher.Refresh(this,av.getSequenceSetId());
     av.sendSelection();
   }
 
@@ -333,6 +334,7 @@ public class ScalePanel extends JPanel
     ap.paintAlignment(false, false);
     av.isSelectionGroupChanged(true);
     av.isColSelChanged(true);
+    PaintRefresher.Refresh(ap, av.getSequenceSetId());
     av.sendSelection();
   }
 
@@ -366,6 +368,7 @@ public class ScalePanel extends JPanel
       stretchingGroup = true;
       cs.stretchGroup(res, sg, min, max);
       ap.paintAlignment(false, false);
+      PaintRefresher.Refresh(ap, av.getSequenceSetId());
     }
   }
 
@@ -409,6 +412,9 @@ public class ScalePanel extends JPanel
     reveal = null;
     if (!av.hasHiddenColumns())
     {
+      int res = (evt.getX() / av.getCharWidth())
+              + av.getRanges().getStartRes();
+      highlightAllStructPos(res);
       return;
     }
 
@@ -419,13 +425,21 @@ public class ScalePanel extends JPanel
             .getRegionWithEdgeAtRes(res);
 
     res = av.getAlignment().getHiddenColumns().visibleToAbsoluteColumn(res);
-
+    highlightAllStructPos(res);
     ToolTipManager.sharedInstance().registerComponent(this);
     this.setToolTipText(
             MessageManager.getString("label.reveal_hidden_columns"));
     repaint();
   }
 
+  public void highlightAllStructPos(int col)
+  {
+    ap.getStructureSelectionManager().highlightPositionsOnMany(
+            ap.av.getAlignment().getSequencesArray(), new int[]
+            { col, col }, ap);
+
+  }
+
   /**
    * DOCUMENT ME!
    *