Recalc accelerated

[jalview.git] / src / jalview / gui / SeqPanel.java

diff --git a/src/jalview/gui/SeqPanel.java b/src/jalview/gui/SeqPanel.java
index f4d77c3..52d137b 100755 (executable)
--- a/src/jalview/gui/SeqPanel.java
+++ b/src/jalview/gui/SeqPanel.java
@@ -570,7 +570,7 @@ public class SeqPanel
       SequenceGroup sg = new SequenceGroup();\r
       sg.setStartRes(res);\r
       sg.setEndRes(res);\r
-      sg.addSequence(sequence);\r
+      sg.addSequence(sequence, false);\r
       av.setSelectionGroup(sg);\r
       stretchGroup = sg;\r
 \r
@@ -620,11 +620,12 @@ public class SeqPanel
       return;\r
     }\r
 \r
+    stretchGroup.recalcConservation();\r
+\r
     if (stretchGroup.cs instanceof ClustalxColourScheme)\r
     {\r
       stretchGroup.cs = new ClustalxColourScheme(stretchGroup.sequences,\r
                                                  av.alignment.getWidth());\r
-      repaint();\r
     }\r
     else if (stretchGroup.cs instanceof ConservationColourScheme)\r
     {\r
@@ -633,7 +634,6 @@ public class SeqPanel
       SliderPanel.setConservationSlider(ap, stretchGroup.cs,\r
                                         stretchGroup.getName());\r
 \r
-      repaint();\r
     }\r
     else\r
     {\r
@@ -644,6 +644,7 @@ public class SeqPanel
     changeEndRes = false;\r
     changeStartRes = false;\r
     stretchGroup = null;\r
+    repaint();\r
     ap.idPanel.repaint();\r
   }\r
 \r
@@ -720,17 +721,17 @@ public class SeqPanel
 \r
       if (stretchGroup.sequences.contains(nextSeq))\r
       {\r
-        stretchGroup.deleteSequence(seq);\r
-        stretchGroup.deleteSequence(nextSeq);\r
+        stretchGroup.deleteSequence(seq, false);\r
+        stretchGroup.deleteSequence(nextSeq, false);\r
       }\r
       else\r
       {\r
         if (seq != null)\r
         {\r
-          stretchGroup.addSequence(seq);\r
+          stretchGroup.addSequence(seq, false);\r
         }\r
 \r
-        stretchGroup.addSequence(nextSeq);\r
+        stretchGroup.addSequence(nextSeq, false);\r
       }\r
     }\r
 \r