Merge branch 'develop' into trialMerge

[jalview.git] / src / jalview / gui / SequenceFetcher.java

diff --git a/src/jalview/gui/SequenceFetcher.java b/src/jalview/gui/SequenceFetcher.java
index 4340293..8e1d549 100755 (executable)
--- a/src/jalview/gui/SequenceFetcher.java
+++ b/src/jalview/gui/SequenceFetcher.java
@@ -1,6 +1,6 @@
 /*
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.9.0b2)
- * Copyright (C) 2015 The Jalview Authors
+ * Jalview - A Sequence Alignment Editor and Viewer ($$Version-Rel$$)
+ * Copyright (C) $$Year-Rel$$ The Jalview Authors
  * 
  * This file is part of Jalview.
  * 
@@ -28,6 +28,7 @@ import jalview.datamodel.SequenceFeature;
 import jalview.datamodel.SequenceI;
 import jalview.fts.service.pdb.PDBFTSPanel;
 import jalview.fts.service.uniprot.UniprotFTSPanel;
+import jalview.io.FileFormatI;
 import jalview.io.gff.SequenceOntologyI;
 import jalview.util.DBRefUtils;
 import jalview.util.MessageManager;
@@ -234,14 +235,14 @@ public class SequenceFetcher extends JPanel implements Runnable
             @Override
             public void run()
             {
-              JOptionPane
+              JvOptionPane
                       .showInternalMessageDialog(
                               Desktop.desktop,
                               MessageManager
                                       .getString("warn.couldnt_create_sequence_fetcher_client"),
                               MessageManager
                                       .getString("label.couldnt_create_sequence_fetcher"),
-                              JOptionPane.ERROR_MESSAGE);
+                              JvOptionPane.ERROR_MESSAGE);
             }
           });
 
@@ -978,7 +979,7 @@ public class SequenceFetcher extends JPanel implements Runnable
   }
 
   AlignmentI parseResult(AlignmentI al, String title,
-          String currentFileFormat,
+          FileFormatI currentFileFormat,
           FeatureSettingsModelI preferredFeatureColours)
   {
 
@@ -1059,9 +1060,9 @@ public class SequenceFetcher extends JPanel implements Runnable
       @Override
       public void run()
       {
-        JOptionPane.showInternalMessageDialog(Desktop.desktop, error,
+        JvOptionPane.showInternalMessageDialog(Desktop.desktop, error,
                 MessageManager.getString("label.error_retrieving_data"),
-                JOptionPane.WARNING_MESSAGE);
+                JvOptionPane.WARNING_MESSAGE);
       }
     });
   }