JAL-2371 CollectionColourScheme renamed ResidueShader and moved to

[jalview.git] / src / jalview / gui / SequenceRenderer.java

diff --git a/src/jalview/gui/SequenceRenderer.java b/src/jalview/gui/SequenceRenderer.java
index 311439a..e77536d 100755 (executable)
--- a/src/jalview/gui/SequenceRenderer.java
+++ b/src/jalview/gui/SequenceRenderer.java
@@ -23,7 +23,7 @@ package jalview.gui;
 import jalview.api.FeatureRenderer;
 import jalview.datamodel.SequenceGroup;
 import jalview.datamodel.SequenceI;
-import jalview.schemes.CollectionColourSchemeI;
+import jalview.renderer.ResidueShaderI;
 import jalview.util.Comparison;
 
 import java.awt.Color;
@@ -132,19 +132,18 @@ public class SequenceRenderer implements jalview.api.SequenceRenderer
   /**
    * DOCUMENT ME!
    * 
-   * @param collectionColourSchemeI
+   * @param shader
    *          DOCUMENT ME!
    * @param seq
    *          DOCUMENT ME!
    * @param i
    *          DOCUMENT ME!
    */
-  void getBoxColour(CollectionColourSchemeI collectionColourSchemeI,
-          SequenceI seq, int i)
+  void getBoxColour(ResidueShaderI shader, SequenceI seq, int i)
   {
-    if (collectionColourSchemeI != null)
+    if (shader != null)
     {
-      resBoxColour = collectionColourSchemeI.findColour(seq.getCharAt(i),
+      resBoxColour = shader.findColour(seq.getCharAt(i),
               i, seq);
     }
     else if (forOverview && !Comparison.isGap(seq.getCharAt(i)))