Merge commit 'alpha/update_2_12_for_2_11_2_series_merge^2' into HEAD

[jalview.git] / src / jalview / gui / SplitFrame.java

diff --git a/src/jalview/gui/SplitFrame.java b/src/jalview/gui/SplitFrame.java
index f57279e..a246495 100644 (file)
--- a/src/jalview/gui/SplitFrame.java
+++ b/src/jalview/gui/SplitFrame.java
@@ -20,6 +20,19 @@
  */
 package jalview.gui;
 
+import jalview.api.AlignViewportI;
+import jalview.api.AlignViewControllerGuiI;
+import jalview.api.FeatureSettingsControllerI;
+import jalview.api.SplitContainerI;
+import jalview.controller.FeatureSettingsControllerGuiI;
+import jalview.datamodel.AlignmentI;
+import jalview.jbgui.GAlignFrame;
+import jalview.jbgui.GSplitFrame;
+import jalview.structure.StructureSelectionManager;
+import jalview.util.MessageManager;
+import jalview.util.Platform;
+import jalview.viewmodel.AlignmentViewport;
+
 import java.awt.BorderLayout;
 import java.awt.Component;
 import java.awt.Dimension;
@@ -49,18 +62,6 @@ import javax.swing.event.ChangeListener;
 import javax.swing.event.InternalFrameAdapter;
 import javax.swing.event.InternalFrameEvent;
 
-import jalview.api.AlignViewControllerGuiI;
-import jalview.api.FeatureSettingsControllerI;
-import jalview.api.SplitContainerI;
-import jalview.controller.FeatureSettingsControllerGuiI;
-import jalview.datamodel.AlignmentI;
-import jalview.jbgui.GAlignFrame;
-import jalview.jbgui.GSplitFrame;
-import jalview.structure.StructureSelectionManager;
-import jalview.util.MessageManager;
-import jalview.util.Platform;
-import jalview.viewmodel.AlignmentViewport;
-
 /**
  * An internal frame on the desktop that hosts a horizontally split view of
  * linked DNA and Protein alignments. Additional views can be created in linked
@@ -152,7 +153,7 @@ public class SplitFrame extends GSplitFrame implements SplitContainerI
     // allow about 65 pixels for Desktop decorators on Windows
 
     int newHeight = Math.min(height,
-            Desktop.instance.getHeight() - DESKTOP_DECORATORS_HEIGHT);
+            Desktop.getInstance().getHeight() - DESKTOP_DECORATORS_HEIGHT);
     if (newHeight != height)
     {
       int oldDividerLocation = getDividerLocation();
@@ -170,7 +171,7 @@ public class SplitFrame extends GSplitFrame implements SplitContainerI
     // TODO if CommandListener is only ever 1:1 for complementary views,
     // may change broadcast pattern to direct messaging (more efficient)
     final StructureSelectionManager ssm = StructureSelectionManager
-            .getStructureSelectionManager(Desktop.instance);
+            .getStructureSelectionManager(Desktop.getInstance());
     ssm.addCommandListener(((AlignFrame) getTopFrame()).getViewport());
     ssm.addCommandListener(((AlignFrame) getBottomFrame()).getViewport());
   }
@@ -230,8 +231,8 @@ public class SplitFrame extends GSplitFrame implements SplitContainerI
     topFrame.alignPanel.adjustAnnotationHeight();
     bottomFrame.alignPanel.adjustAnnotationHeight();
 
-    final AlignViewport topViewport = topFrame.viewport;
-    final AlignViewport bottomViewport = bottomFrame.viewport;
+    final AlignViewportI topViewport = topFrame.viewport;
+    final AlignViewportI bottomViewport = bottomFrame.viewport;
     final AlignmentI topAlignment = topViewport.getAlignment();
     final AlignmentI bottomAlignment = bottomViewport.getAlignment();
     boolean topAnnotations = topViewport.isShowAnnotation();
@@ -571,7 +572,7 @@ public class SplitFrame extends GSplitFrame implements SplitContainerI
     adjustLayout();
 
     final StructureSelectionManager ssm = StructureSelectionManager
-            .getStructureSelectionManager(Desktop.instance);
+            .getStructureSelectionManager(Desktop.getInstance());
     ssm.addCommandListener(newTopPanel.av);
     ssm.addCommandListener(newBottomPanel.av);
   }
@@ -698,7 +699,7 @@ public class SplitFrame extends GSplitFrame implements SplitContainerI
    */
   protected void expandViews_actionPerformed()
   {
-    Desktop.instance.explodeViews(this);
+    Desktop.getInstance().explodeViews(this);
   }
 
   /**
@@ -707,7 +708,7 @@ public class SplitFrame extends GSplitFrame implements SplitContainerI
    */
   protected void gatherViews_actionPerformed()
   {
-    Desktop.instance.gatherViews(this);
+    Desktop.getInstance().gatherViews(this);
   }
 
   /**
@@ -814,7 +815,11 @@ public class SplitFrame extends GSplitFrame implements SplitContainerI
         if (c != null && c instanceof AlignFrame)
         {
           AlignFrame af = (AlignFrame) c;
-          new Finder(af.viewport, af.alignPanel);
+          boolean dna = af.getViewport().getAlignment().isNucleotide();
+          String scope = MessageManager.getString("label.in") + " "
+                  + (dna ? MessageManager.getString("label.nucleotide")
+                          : MessageManager.getString("label.protein"));
+          new Finder(af.alignPanel, true, scope);
         }
       }
     };
@@ -1100,4 +1105,4 @@ public class SplitFrame extends GSplitFrame implements SplitContainerI
   {
     return featureSettingsUI != null && !featureSettingsUI.isClosed();
   }
-}
\ No newline at end of file
+}