public JalviewStructureDisplayI viewStructures(PDBEntry[] pdbs,
SequenceI[] seqs, AlignmentPanel ap)
{
+ return viewStructures(pdbs, seqs, ap, null);
+ }
+
+ public JalviewStructureDisplayI viewStructures(PDBEntry[] pdbs,
+ SequenceI[] seqs, AlignmentPanel ap, ViewerType viewerType)
+ {
JalviewStructureDisplayI viewer = onlyOnePdb(pdbs, seqs, ap);
if (viewer != null)
{
return viewer;
}
- ViewerType viewerType = getViewerType();
+ if (viewerType == null)
+ viewerType = getViewerType();
Map<PDBEntry, SequenceI[]> seqsForPdbs = getSequencesForPdbs(pdbs,
seqs);
public JalviewStructureDisplayI viewStructures(PDBEntry pdb,
SequenceI[] seqsForPdb, AlignmentPanel ap)
{
+ return viewStructures(pdb, seqsForPdb, ap, null);
+ }
+
+ public JalviewStructureDisplayI viewStructures(PDBEntry pdb,
+ SequenceI[] seqsForPdb, AlignmentPanel ap, ViewerType viewerType)
+ {
if (sview != null)
{
sview.setAlignAddedStructures(superposeAdded);
sview.raiseViewer();
return sview;
}
- ViewerType viewerType = getViewerType();
+ if (viewerType == null)
+ viewerType = getViewerType();
if (viewerType.equals(ViewerType.JMOL))
{
sview = new AppJmol(pdb, seqsForPdb, null, ap);