JAL-3390 first draft of showing only visible alignment in Chimera

[jalview.git] / src / jalview / gui / StructureViewerBase.java

diff --git a/src/jalview/gui/StructureViewerBase.java b/src/jalview/gui/StructureViewerBase.java
index 35a5475..5c50044 100644 (file)
--- a/src/jalview/gui/StructureViewerBase.java
+++ b/src/jalview/gui/StructureViewerBase.java
@@ -709,6 +709,18 @@ public abstract class StructureViewerBase extends GStructureViewer
             });
     viewMenu.add(seqColourBy);
 
+    showAlignmentOnly = new JCheckBoxMenuItem("Visible alignment only");
+    showAlignmentOnly.addActionListener(new ActionListener()
+    {
+      @Override
+      public void actionPerformed(ActionEvent e)
+      {
+        getBinding().setShowAlignmentOnly(showAlignmentOnly.isSelected());
+        getBinding().showStructures(getAlignmentPanel().getAlignViewport());
+      }
+    });
+    viewMenu.add(showAlignmentOnly);
+
     final ItemListener handler = new ItemListener()
     {
       @Override