JAL-2371 rename global/viewportColourScheme to residueShading

[jalview.git] / src / jalview / gui / TreeCanvas.java

diff --git a/src/jalview/gui/TreeCanvas.java b/src/jalview/gui/TreeCanvas.java
index 9fa98ee..54eed1a 100755 (executable)
--- a/src/jalview/gui/TreeCanvas.java
+++ b/src/jalview/gui/TreeCanvas.java
@@ -1010,7 +1010,7 @@ public class TreeCanvas extends JPanel implements MouseListener, Runnable,
       }
       sg.setColourScheme(cs);
       sg.getGroupColourScheme().setThreshold(
-              av.getViewportColourScheme().getThreshold(),
+              av.getResidueShading().getThreshold(),
               av.isIgnoreGapsConsensus());
       // sg.recalcConservation();
       sg.setName("JTreeGroup:" + sg.hashCode());
@@ -1019,7 +1019,7 @@ public class TreeCanvas extends JPanel implements MouseListener, Runnable,
       for (int a = 0; a < aps.length; a++)
       {
         if (aps[a].av.getGlobalColourScheme() != null
-                && aps[a].av.getViewportColourScheme()
+                && aps[a].av.getResidueShading()
                         .conservationApplied())
         {
           Conservation c = new Conservation("Group", sg.getSequences(null),