Merge branch 'releases/Release_2_10_0_Branch'

[jalview.git] / src / jalview / gui / TreeCanvas.java

diff --git a/src/jalview/gui/TreeCanvas.java b/src/jalview/gui/TreeCanvas.java
index 279d9ad..0bbea64 100755 (executable)
--- a/src/jalview/gui/TreeCanvas.java
+++ b/src/jalview/gui/TreeCanvas.java
@@ -1,6 +1,6 @@
 /*
- * Jalview - A Sequence Alignment Editor and Viewer ($$Version-Rel$$)
- * Copyright (C) $$Year-Rel$$ The Jalview Authors
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.9.0b2)
+ * Copyright (C) 2015 The Jalview Authors
  * 
  * This file is part of Jalview.
  * 
@@ -29,7 +29,6 @@ import jalview.datamodel.SequenceI;
 import jalview.datamodel.SequenceNode;
 import jalview.schemes.ColourSchemeI;
 import jalview.schemes.ColourSchemeProperty;
-import jalview.schemes.ResidueProperties;
 import jalview.schemes.UserColourScheme;
 import jalview.structure.SelectionSource;
 import jalview.util.Format;
@@ -755,6 +754,14 @@ public class TreeCanvas extends JPanel implements MouseListener, Runnable,
   @Override
   public void mouseReleased(MouseEvent e)
   {
+    /*
+     * isPopupTrigger is set on mouseReleased on Windows
+     */
+    if (e.isPopupTrigger())
+    {
+      chooseSubtreeColour();
+      e.consume(); // prevent mouseClicked happening
+    }
   }
 
   /**
@@ -792,15 +799,7 @@ public class TreeCanvas extends JPanel implements MouseListener, Runnable,
       return;
     }
 
-    /*
-     * isPopupTrigger is set on mouseReleased /
-     * mouseClicked on Windows
-     */
-    if (evt.isPopupTrigger())
-    {
-      chooseSubtreeColour();
-    }
-    else if (evt.getClickCount() > 1)
+    if (evt.getClickCount() > 1)
     {
       tree.swapNodes(highlightNode);
       tree.reCount(tree.getTopNode());
@@ -812,8 +811,7 @@ public class TreeCanvas extends JPanel implements MouseListener, Runnable,
 
       for (int i = 0; i < leaves.size(); i++)
       {
-        SequenceI seq = (SequenceI) leaves.elementAt(i)
-                .element();
+        SequenceI seq = (SequenceI) leaves.elementAt(i).element();
         treeSelectionChanged(seq);
       }
       av.sendSelection();
@@ -887,7 +885,7 @@ public class TreeCanvas extends JPanel implements MouseListener, Runnable,
 
     /*
      * isPopupTrigger is set for mousePressed (Mac)
-     * or mouseReleased / mouseClicked (Windows)
+     * or mouseReleased (Windows)
      */
     if (e.isPopupTrigger())
     {
@@ -967,17 +965,16 @@ public class TreeCanvas extends JPanel implements MouseListener, Runnable,
     {
       Color col = new Color((int) (Math.random() * 255),
               (int) (Math.random() * 255), (int) (Math.random() * 255));
-      setColor((SequenceNode) tree.getGroups().elementAt(i), col.brighter());
+      setColor(tree.getGroups().elementAt(i), col.brighter());
 
-      Vector<SequenceNode> l = tree.findLeaves((SequenceNode) tree
-              .getGroups().elementAt(i));
+      Vector<SequenceNode> l = tree.findLeaves(tree.getGroups()
+              .elementAt(i));
 
       Vector<SequenceI> sequences = new Vector<SequenceI>();
 
       for (int j = 0; j < l.size(); j++)
       {
-        SequenceI s1 = (SequenceI) l.elementAt(j)
-                .element();
+        SequenceI s1 = (SequenceI) l.elementAt(j).element();
 
         if (!sequences.contains(s1))
         {
@@ -1020,10 +1017,8 @@ public class TreeCanvas extends JPanel implements MouseListener, Runnable,
         if (aps[a].av.getGlobalColourScheme() != null
                 && aps[a].av.getGlobalColourScheme().conservationApplied())
         {
-          Conservation c = new Conservation("Group",
-                  ResidueProperties.propHash, 3, sg.getSequences(null),
-                  sg.getStartRes(), sg.getEndRes());
-
+          Conservation c = new Conservation("Group", 3,
+                  sg.getSequences(null), sg.getStartRes(), sg.getEndRes());
           c.calculate();
           c.verdict(false, aps[a].av.getConsPercGaps());
           sg.cs.setConservation(c);