import jalview.jbgui.GTreePanel;
import jalview.util.ImageMaker;
import jalview.util.MessageManager;
+import jalview.util.dialogrunner.RunResponse;
import jalview.viewmodel.AlignmentViewport;
import java.awt.Font;
import java.awt.event.ActionListener;
import java.awt.image.BufferedImage;
import java.beans.PropertyChangeEvent;
+import java.beans.PropertyChangeListener;
+import java.io.File;
import java.io.FileOutputStream;
import java.util.ArrayList;
import java.util.List;
+import java.util.concurrent.atomic.AtomicBoolean;
import javax.imageio.ImageIO;
import javax.swing.ButtonGroup;
import javax.swing.JMenuItem;
+import javax.swing.JOptionPane;
import javax.swing.JRadioButtonMenuItem;
+import javax.swing.event.InternalFrameAdapter;
+import javax.swing.event.InternalFrameEvent;
import org.jibble.epsgraphics.EpsGraphics2D;
buildAssociatedViewMenu();
- av.addPropertyChangeListener(new java.beans.PropertyChangeListener()
+ final PropertyChangeListener listener = addAlignmentListener();
+
+ /*
+ * remove listener when window is closed, so that this
+ * panel can be garbage collected
+ */
+ addInternalFrameListener(new InternalFrameAdapter()
+ {
+ @Override
+ public void internalFrameClosed(InternalFrameEvent evt)
+ {
+ if (av != null)
+ {
+ av.removePropertyChangeListener(listener);
+ }
+ }
+ });
+
+ TreeLoader tl = new TreeLoader(newTree, inputData);
+ tl.start();
+
+ }
+
+ /**
+ * @return
+ */
+ protected PropertyChangeListener addAlignmentListener()
+ {
+ final PropertyChangeListener listener = new PropertyChangeListener()
{
@Override
public void propertyChange(PropertyChangeEvent evt)
repaint();
}
}
- });
-
- TreeLoader tl = new TreeLoader(newTree, inputData);
- tl.start();
-
+ };
+ av.addPropertyChangeListener(listener);
+ return listener;
}
@Override
@Override
public void saveAsNewick_actionPerformed(ActionEvent e)
{
+ // TODO: JAL-3048 save newick file for Jalview-JS
JalviewFileChooser chooser = new JalviewFileChooser(
jalview.bin.Cache.getProperty("LAST_DIRECTORY"));
chooser.setFileView(new JalviewFileView());
if (treeCanvas.applyToAllViews)
{
- final ArrayList<CommandI> commands = new ArrayList<CommandI>();
+ final ArrayList<CommandI> commands = new ArrayList<>();
for (AlignmentPanel ap : PaintRefresher
.getAssociatedPanels(av.getSequenceSetId()))
{
public CommandI sortAlignmentIn(AlignmentPanel ap)
{
+ // TODO: move to alignment view controller
AlignmentViewport viewport = ap.av;
SequenceI[] oldOrder = viewport.getAlignment().getSequencesArray();
AlignmentSorter.sortByTree(viewport.getAlignment(), tree);
CommandI undo;
undo = new OrderCommand("Tree Sort", oldOrder, viewport.getAlignment());
- ap.paintAlignment(true);
+ ap.paintAlignment(true, false);
return undo;
}
}
/**
- * DOCUMENT ME!
- *
- * @param e
- * DOCUMENT ME!
+ * Outputs the Tree in EPS format. The user is prompted for the file to save
+ * to, and (unless a preference is already set) for the choice of Text or
+ * Lineart for character rendering.
*/
@Override
- public void epsTree_actionPerformed(ActionEvent e)
+ public void epsTree_actionPerformed()
{
- boolean accurateText = true;
-
- String renderStyle = jalview.bin.Cache.getDefault("EPS_RENDERING",
- "Prompt each time");
-
- // If we need to prompt, and if the GUI is visible then
- // Prompt for EPS rendering style
- if (renderStyle.equalsIgnoreCase("Prompt each time")
- && !(System.getProperty("java.awt.headless") != null && System
- .getProperty("java.awt.headless").equals("true")))
- {
- EPSOptions eps = new EPSOptions();
- renderStyle = eps.getValue();
-
- if (renderStyle == null || eps.cancelled)
- {
- return;
- }
+ JalviewFileChooser chooser = new JalviewFileChooser(
+ ImageMaker.EPS_EXTENSION, ImageMaker.EPS_EXTENSION);
+ chooser.setFileView(new JalviewFileView());
+ chooser.setDialogTitle(
+ MessageManager.getString("label.create_eps_from_tree"));
+ chooser.setToolTipText(MessageManager.getString("action.save"));
- }
+ int value = chooser.showSaveDialog(this);
- if (renderStyle.equalsIgnoreCase("text"))
+ if (value != JalviewFileChooser.APPROVE_OPTION)
{
- accurateText = false;
+ return;
}
+ File outFile = chooser.getSelectedFile();
+ Cache.setProperty("LAST_DIRECTORY", outFile.getParent());
- int width = treeCanvas.getWidth();
- int height = treeCanvas.getHeight();
+ String renderStyle = Cache.getDefault("EPS_RENDERING",
+ "Prompt each time");
+ AtomicBoolean textOption = new AtomicBoolean(
+ !"Lineart".equals(renderStyle));
- try
+ /*
+ * configure the export action to run on OK in the dialog
+ */
+ RunResponse okAction = new RunResponse(JOptionPane.OK_OPTION)
{
- JalviewFileChooser chooser = new JalviewFileChooser(
- ImageMaker.EPS_EXTENSION, ImageMaker.EPS_EXTENSION);
- chooser.setFileView(new JalviewFileView());
- chooser.setDialogTitle(
- MessageManager.getString("label.create_eps_from_tree"));
- chooser.setToolTipText(MessageManager.getString("action.save"));
-
- int value = chooser.showSaveDialog(this);
-
- if (value != JalviewFileChooser.APPROVE_OPTION)
+ @Override
+ public void run()
{
- return;
+ writeEpsFile(outFile, textOption.get());
}
+ };
- Cache.setProperty("LAST_DIRECTORY",
- chooser.getSelectedFile().getParent());
-
- FileOutputStream out = new FileOutputStream(
- chooser.getSelectedFile());
- EpsGraphics2D pg = new EpsGraphics2D("Tree", out, 0, 0, width,
- height);
-
- pg.setAccurateTextMode(accurateText);
-
- treeCanvas.draw(pg, width, height);
-
- pg.flush();
- pg.close();
- } catch (Exception ex)
+ /*
+ * Prompt for character rendering style if preference is not set
+ */
+ if (renderStyle.equalsIgnoreCase("Prompt each time")
+ && !(System.getProperty("java.awt.headless") != null && System
+ .getProperty("java.awt.headless").equals("true")))
{
- ex.printStackTrace();
+ LineartOptions eps = new LineartOptions("EPS_RENDERING", "EPS",
+ textOption);
+ eps.setResponseAction(okAction);
+ eps.showDialog();
+ /* no code here - JalviewJS won't execute it */
+ }
+ else
+ {
+ /*
+ * if preference set, just run the export action
+ */
+ writeEpsFile(outFile, textOption.get());
}
}
treecalcnm, smn);
return ttl;
}
+
+ /**
+ * Builds an EPS image and writes it to the specified file.
+ *
+ * @param outFile
+ * @param textOption
+ * true for Text character rendering, false for Lineart
+ */
+ protected void writeEpsFile(File outFile, boolean textOption)
+ {
+ try
+ {
+ int width = treeCanvas.getWidth();
+ int height = treeCanvas.getHeight();
+
+ FileOutputStream out = new FileOutputStream(
+ outFile);
+ EpsGraphics2D pg = new EpsGraphics2D("Tree", out, 0, 0, width,
+ height);
+ pg.setAccurateTextMode(!textOption);
+ treeCanvas.draw(pg, width, height);
+
+ pg.flush();
+ pg.close();
+ } catch (Exception ex)
+ {
+ System.err.println("Error writing tree as EPS");
+ ex.printStackTrace();
+ }
+ }
}
git://source.jalview.org / jalview.git / blobdiff