JAL-2629 fix hmmsearch/jackhmmer being unable to search through DB file

[jalview.git] / src / jalview / hmmer / HmmerCommand.java

diff --git a/src/jalview/hmmer/HmmerCommand.java b/src/jalview/hmmer/HmmerCommand.java
index 6eb294f..a30c524 100644 (file)
--- a/src/jalview/hmmer/HmmerCommand.java
+++ b/src/jalview/hmmer/HmmerCommand.java
@@ -62,13 +62,15 @@ public abstract class HmmerCommand implements Runnable
 
   static final String TRIM_TERMINI_KEY = "label.trim_termini";
 
+  static final String RETURN_N_NEW_SEQ = "label.check_for_new_sequences";
+
   static final String REPORTING_CUTOFF_KEY = "label.reporting_cutoff";
 
-  static final String CUTOFF_NONE = "None";
+  static final String CUTOFF_NONE = "label.default";
 
-  static final String CUTOFF_SCORE = "Score";
+  static final String CUTOFF_SCORE = "label.score";
 
-  static final String CUTOFF_EVALUE = "E-Value";
+  static final String CUTOFF_EVALUE = "label.evalue";
 
   static final String SEQ_EVALUE_KEY = "label.seq_evalue";