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JAL-2629 can now choose number of jackhmmer iterations
[jalview.git]
/
src
/
jalview
/
hmmer
/
Search.java
diff --git
a/src/jalview/hmmer/Search.java
b/src/jalview/hmmer/Search.java
index
5c7da7c
..
ceb79e5
100644
(file)
--- a/
src/jalview/hmmer/Search.java
+++ b/
src/jalview/hmmer/Search.java
@@
-329,6
+329,15
@@
public abstract class Search extends HmmerCommand
searchAlignment = false;
}
}
+ else if (MessageManager.getString(NUMBER_OF_ITERATIONS)
+ .equals(name))
+ {
+ if (!arg.getValue().isEmpty())
+ {
+ args.add("-N");
+ args.add(arg.getValue());
+ }
+ }
}
}