}\r
\r
// Checks whether sequence is valid aa characters\r
- protected boolean isValidProteinSequence(String sequence)\r
+ protected boolean isValidProteinSequence(char [] sequence)\r
{\r
- for (int i = 0; i < sequence.length(); i++)\r
- if (jalview.schemes.ResidueProperties.aaIndex[sequence.charAt(i)]==-1)\r
+ for (int i = 0; i < sequence.length; i++)\r
+ if (jalview.schemes.ResidueProperties.aaIndex[sequence[i]]==-1)\r
{\r
- invalidCharacter = sequence.charAt(i);\r
+ invalidCharacter = sequence[i];\r
return false;\r
}\r
\r