formatting

[jalview.git] / src / jalview / io / AnnotationFile.java

diff --git a/src/jalview/io/AnnotationFile.java b/src/jalview/io/AnnotationFile.java
index b3b2111..7855fe3 100755 (executable)
--- a/src/jalview/io/AnnotationFile.java
+++ b/src/jalview/io/AnnotationFile.java
@@ -57,7 +57,7 @@ public class AnnotationFile
 \r
   private void init()\r
   {\r
-    text = new StringBuffer("JALVIEW_ANNOTATION"+newline + "# Created: "\r
+    text = new StringBuffer("JALVIEW_ANNOTATION" + newline + "# Created: "\r
             + new java.util.Date() + newline + newline);\r
     refSeq = null;\r
     refSeqId = null;\r
@@ -422,7 +422,7 @@ public class AnnotationFile
   public void printGroups(List<SequenceGroup> list)\r
   {\r
     SequenceI seqrep = null;\r
-    for (SequenceGroup sg:list)\r
+    for (SequenceGroup sg : list)\r
     {\r
       if (!sg.hasSeqrep())\r
       {\r
@@ -887,7 +887,7 @@ public class AnnotationFile
       }\r
       // Finally, resolve the groupRefs\r
       Enumeration en = groupRefRows.keys();\r
-      \r
+\r
       while (en.hasMoreElements())\r
       {\r
         groupRef = (String) en.nextElement();\r
@@ -1013,8 +1013,8 @@ public class AnnotationFile
         }\r
       }\r
       if (hasSymbols\r
-              && (token.equals("H") || token.equals("E") || token.equals("S") || token\r
-                      .equals(" ")))\r
+              && (token.equals("H") || token.equals("E")\r
+                      || token.equals("S") || token.equals(" ")))\r
       {\r
         // Either this character represents a helix or sheet\r
         // or an integer which can be displayed\r
@@ -1288,12 +1288,12 @@ public class AnnotationFile
     {\r
       return;\r
     }\r
-    \r
+\r
     String name = st.nextToken();\r
-    SequenceGroup sg=null;\r
-    for (SequenceGroup _sg:al.getGroups())\r
+    SequenceGroup sg = null;\r
+    for (SequenceGroup _sg : al.getGroups())\r
     {\r
-      if ((sg=_sg).getName().equals(name))\r
+      if ((sg = _sg).getName().equals(name))\r
       {\r
         break;\r
       }\r