{
// TODO obtain config value from preference settings.
// Set value to 'true' to test PDB processing with Jmol: JAL-1213
- boolean isParseWithJMOL = false;
+ boolean isParseWithJMOL = !StructureViewSettings
+ .getCurrentDefaultFormat().equalsIgnoreCase("PDB");
if (isParseWithJMOL)
{
StructureViewSettings.addSettings(annotFromStructure,
}
else
{
+ StructureViewSettings.addSettings(annotFromStructure,
+ localSecondaryStruct, serviceSecondaryStruct);
StructureViewSettings.setShowSeqFeatures(true);
alignFile = new MCview.PDBfile(annotFromStructure,
localSecondaryStruct, serviceSecondaryStruct, inFile,