Merge branch 'develop' into features/JAL-518_justify_seqs_in_region

[jalview.git] / src / jalview / io / ClustalFile.java

diff --git a/src/jalview/io/ClustalFile.java b/src/jalview/io/ClustalFile.java
index afb2009..b6f36e8 100755 (executable)
--- a/src/jalview/io/ClustalFile.java
+++ b/src/jalview/io/ClustalFile.java
@@ -140,7 +140,7 @@ public class ClustalFile extends AlignFile
       }
     } catch (IOException e)
     {
-      System.err.println("Exception parsing clustal file " + e);
+      jalview.bin.Console.errPrintln("Exception parsing clustal file " + e);
       e.printStackTrace();
     }
 
@@ -168,8 +168,9 @@ public class ClustalFile extends AlignFile
         }
         else
         {
-          System.err.println("Clustal File Reader: Can't find sequence for "
-                  + headers.elementAt(i));
+          jalview.bin.Console.errPrintln(
+                  "Clustal File Reader: Can't find sequence for "
+                          + headers.elementAt(i));
         }
       }
       AlignmentAnnotation lastssa = null;