JAL-1807 explicit imports (jalview.io.*)

[jalview.git] / src / jalview / io / FeaturesFile.java

diff --git a/src/jalview/io/FeaturesFile.java b/src/jalview/io/FeaturesFile.java
index 57f6384..f965d23 100755 (executable)
--- a/src/jalview/io/FeaturesFile.java
+++ b/src/jalview/io/FeaturesFile.java
@@ -31,6 +31,7 @@ import jalview.schemes.GraduatedColor;
 import jalview.schemes.UserColourScheme;
 import jalview.util.Format;
 import jalview.util.MapList;
+import jalview.util.ParseHtmlBodyAndLinks;
 
 import java.io.IOException;
 import java.util.ArrayList;
@@ -393,7 +394,7 @@ public class FeaturesFile extends AlignFile
               }
               try
               {
-                colour = new jalview.schemes.GraduatedColor(
+                colour = new GraduatedColor(
                         new UserColourScheme(mincol).findColour('A'),
                         new UserColourScheme(maxcol).findColour('A'), min,
                         max);
@@ -406,9 +407,9 @@ public class FeaturesFile extends AlignFile
               }
               if (colour != null)
               {
-                ((jalview.schemes.GraduatedColor) colour)
+                ((GraduatedColor) colour)
                         .setColourByLabel(labelCol);
-                ((jalview.schemes.GraduatedColor) colour)
+                ((GraduatedColor) colour)
                         .setAutoScaled(abso == null);
                 // add in any additional parameters
                 String ttype = null, tval = null;
@@ -418,17 +419,17 @@ public class FeaturesFile extends AlignFile
                   ttype = gcol.nextToken();
                   if (ttype.toLowerCase().startsWith("below"))
                   {
-                    ((jalview.schemes.GraduatedColor) colour)
+                    ((GraduatedColor) colour)
                             .setThreshType(AnnotationColourGradient.BELOW_THRESHOLD);
                   }
                   else if (ttype.toLowerCase().startsWith("above"))
                   {
-                    ((jalview.schemes.GraduatedColor) colour)
+                    ((GraduatedColor) colour)
                             .setThreshType(AnnotationColourGradient.ABOVE_THRESHOLD);
                   }
                   else
                   {
-                    ((jalview.schemes.GraduatedColor) colour)
+                    ((GraduatedColor) colour)
                             .setThreshType(AnnotationColourGradient.NO_THRESHOLD);
                     if (!ttype.toLowerCase().startsWith("no"))
                     {
@@ -444,7 +445,7 @@ public class FeaturesFile extends AlignFile
                   {
                     gcol.nextToken();
                     tval = gcol.nextToken();
-                    ((jalview.schemes.GraduatedColor) colour)
+                    ((GraduatedColor) colour)
                             .setThresh(new Float(tval).floatValue());
                   } catch (Exception e)
                   {
@@ -1155,7 +1156,7 @@ public class FeaturesFile extends AlignFile
     {
       return;
     }
-    jalview.util.ParseHtmlBodyAndLinks parsed = new jalview.util.ParseHtmlBodyAndLinks(
+    ParseHtmlBodyAndLinks parsed = new ParseHtmlBodyAndLinks(
             sf.getDescription(), removeHTML, newline);
 
     sf.description = (removeHTML) ? parsed.getNonHtmlContent()