import jalview.datamodel.HiddenColumns;
import jalview.datamodel.PDBEntry;
import jalview.datamodel.SequenceI;
+import jalview.ext.archaeopteryx.AptxInit;
import jalview.gui.AlignFrame;
import jalview.gui.AlignViewport;
import jalview.gui.Desktop;
this.protocol = protocol;
this.format = format;
- final Thread loader = new Thread(this, "LoadFileThread");
+ final Thread loader = new Thread(this, "LoadFile");
SwingUtilities.invokeLater(new Runnable()
{
return alignFrame;
}
+ // add support for recently opened Aptx trees
public void updateRecentlyOpened()
{
Vector<String> recent = new Vector<>();
alignFrame.getViewport()
.applyFeaturesStyle(proxyColourScheme);
}
+ if (format.isTreeFile())
+ {
+ // make generic instead of Aptx specific?
+ AptxInit.createInstancesFromFile(file,
+ alignFrame.getViewport());
+
+ }
alignFrame.setStatus(MessageManager.formatMessage(
"label.successfully_loaded_file", new String[]
{ title }));
AlignFrame.DEFAULT_WIDTH, AlignFrame.DEFAULT_HEIGHT);
}
+
try
{
alignFrame.setMaximum(