JAL-3210 Barebones gradle/buildship/eclipse. See README

[jalview.git] / src / jalview / io / FormatAdapter.java

diff --git a/src/jalview/io/FormatAdapter.java b/src/jalview/io/FormatAdapter.java
index b0414af..85cf48a 100755 (executable)
--- a/src/jalview/io/FormatAdapter.java
+++ b/src/jalview/io/FormatAdapter.java
@@ -30,7 +30,6 @@ import jalview.datamodel.HiddenColumns;
 import jalview.datamodel.Sequence;
 import jalview.datamodel.SequenceGroup;
 import jalview.datamodel.SequenceI;
-import jalview.gui.Preferences;
 import jalview.util.Comparison;
 
 import java.io.File;
@@ -64,16 +63,13 @@ public class FormatAdapter extends AppletFormatAdapter
 
   private void init()
   {
-    if (jalview.bin.Cache.getDefault(Preferences.STRUCT_FROM_PDB, true))
+    if (jalview.bin.Cache.getDefault("STRUCT_FROM_PDB", true))
     {
-      annotFromStructure = jalview.bin.Cache.getDefault(
-              Preferences.ADD_TEMPFACT_ANN,
+      annotFromStructure = jalview.bin.Cache.getDefault("ADD_TEMPFACT_ANN",
               true);
-      localSecondaryStruct = jalview.bin.Cache.getDefault(
-              Preferences.ADD_SS_ANN,
+      localSecondaryStruct = jalview.bin.Cache.getDefault("ADD_SS_ANN",
               true);
-      serviceSecondaryStruct = jalview.bin.Cache
-              .getDefault(Preferences.USE_RNAVIEW,
+      serviceSecondaryStruct = jalview.bin.Cache.getDefault("USE_RNAVIEW",
               true);
     }
     else