File Parsing returns Alignments, not Sequence[]

[jalview.git] / src / jalview / io / FormatAdapter.java

diff --git a/src/jalview/io/FormatAdapter.java b/src/jalview/io/FormatAdapter.java
index a23bbba..15d4dc3 100755 (executable)
--- a/src/jalview/io/FormatAdapter.java
+++ b/src/jalview/io/FormatAdapter.java
@@ -38,10 +38,12 @@ public class FormatAdapter extends AppletFormatAdapter
       {\r
         SequenceI [] tmp = new SequenceI[seqs.length];\r
         for(int i=0; i<seqs.length; i++)\r
-          tmp [i] = new Sequence(\r
+        {\r
+          tmp[i] = new Sequence(\r
               seqs[i].getName(), omitHiddenColumns[i],\r
               seqs[i].getStart(), seqs[i].getEnd());\r
-\r
+          tmp[i].setDescription(seqs[i].getDescription());\r
+        }\r
         seqs = tmp;\r
       }\r
 \r