package jalview.io;
import jalview.api.ComplexAlignFile;
+import jalview.api.FeatureSettingsModelI;
import jalview.api.FeaturesDisplayedI;
import jalview.datamodel.ColumnSelection;
import jalview.datamodel.SequenceI;
"Print method of HtmlFile is not supported!");
}
+ @Override
public boolean isShowSeqFeatures()
{
return showSeqFeatures;
this.showSeqFeatures = showSeqFeatures;
}
+ @Override
public String getGlobalColourScheme()
{
return globalColourScheme;
this.globalColourScheme = globalColourScheme;
}
+ @Override
public ColumnSelection getColumnSelection()
{
return columnSelection;
this.columnSelection = columnSelection;
}
+ @Override
public SequenceI[] getHiddenSequences()
{
return hiddenSequences;
return displayedFeatures;
}
+ /**
+ * Returns a descriptor for suitable feature display settings with
+ * <ul>
+ * <li>ResNums or insertions features visible</li>
+ * <li>insertions features coloured red</li>
+ * <li>ResNum features coloured by label</li>
+ * <li>Insertions displayed above (on top of) ResNums</li>
+ * </ul>
+ */
+ @Override
+ public FeatureSettingsModelI getFeatureColourScheme()
+ {
+ return new PDBFeatureSettings();
+ }
+
}