Merge branch 'features/JAL-1767pcaInProject' into bug/JAL-3171_maintain_datasets_acro...

[jalview.git] / src / jalview / io / JalviewFileChooser.java

diff --git a/src/jalview/io/JalviewFileChooser.java b/src/jalview/io/JalviewFileChooser.java
index 2a0f8b1..7a21c16 100755 (executable)
--- a/src/jalview/io/JalviewFileChooser.java
+++ b/src/jalview/io/JalviewFileChooser.java
@@ -21,6 +21,7 @@
 //////////////////////////////////////////////////////////////////
 package jalview.io;
 
+import jalview.bin.Cache;
 import jalview.gui.JvOptionPane;
 import jalview.util.MessageManager;
 import jalview.util.Platform;
@@ -64,10 +65,11 @@ public class JalviewFileChooser extends JFileChooser
    * @param selected
    * @return
    */
-  public static JalviewFileChooser forRead(String directory, String selected)
+  public static JalviewFileChooser forRead(String directory,
+          String selected)
   {
-    List<String> extensions = new ArrayList<String>();
-    List<String> descs = new ArrayList<String>();
+    List<String> extensions = new ArrayList<>();
+    List<String> descs = new ArrayList<>();
     for (FileFormatI format : FileFormats.getInstance().getFormats())
     {
       if (format.isReadable())
@@ -94,8 +96,8 @@ public class JalviewFileChooser extends JFileChooser
   {
     // TODO in Java 8, forRead and forWrite can be a single method
     // with a lambda expression parameter for isReadable/isWritable
-    List<String> extensions = new ArrayList<String>();
-    List<String> descs = new ArrayList<String>();
+    List<String> extensions = new ArrayList<>();
+    List<String> descs = new ArrayList<>();
     for (FileFormatI format : FileFormats.getInstance().getFormats())
     {
       if (format.isWritable())
@@ -124,16 +126,14 @@ public class JalviewFileChooser extends JFileChooser
   /**
    * Constructor for a single choice of file extension and description
    * 
-   * @param dir
    * @param extension
    * @param desc
    */
-  public JalviewFileChooser(String dir, String extension, String desc)
+  public JalviewFileChooser(String extension, String desc)
   {
-    // TODO inline dir as Cache.getProperty("LAST_DIRECTORY") ? if applet
-    // builds ok
-    this(dir, new String[] { extension }, new String[] { desc }, desc,
-            true);
+    this(Cache.getProperty("LAST_DIRECTORY"), new String[] { extension },
+            new String[]
+            { desc }, desc, true);
   }
 
   JalviewFileChooser(String dir, String[] extensions, String[] descs,
@@ -142,7 +142,7 @@ public class JalviewFileChooser extends JFileChooser
     super(safePath(dir));
     if (extensions.length == descs.length)
     {
-      List<String[]> formats = new ArrayList<String[]>();
+      List<String[]> formats = new ArrayList<>();
       for (int i = 0; i < extensions.length; i++)
       {
         formats.add(new String[] { extensions[i], descs[i] });
@@ -278,6 +278,19 @@ public class JalviewFileChooser extends JFileChooser
     return null;
   }
 
+  File ourselectedFile = null;
+
+  @Override
+  public File getSelectedFile()
+  {
+    File selfile = super.getSelectedFile();
+    if (selfile == null && ourselectedFile != null)
+    {
+      return ourselectedFile;
+    }
+    return selfile;
+  }
+
   @Override
   public int showSaveDialog(Component parent) throws HeadlessException
   {
@@ -285,23 +298,48 @@ public class JalviewFileChooser extends JFileChooser
 
     setDialogType(SAVE_DIALOG);
 
+    this.setSelectedFile(null);
     int ret = showDialog(parent, MessageManager.getString("action.save"));
+    ourselectedFile = getSelectedFile();
 
+    if (getSelectedFile() == null)
+    {
+      // Workaround for Java 9,10 on OSX - no selected file, but there is a
+      // filename typed in
+      try
+      {
+        String filename = ((BasicFileChooserUI) getUI()).getFileName();
+        if (filename != null && filename.length() > 0)
+        {
+          ourselectedFile = new File(getCurrentDirectory(), filename);
+        }
+      } catch (Throwable x)
+      {
+        System.err.println(
+                "Unexpected exception when trying to get filename.");
+        x.printStackTrace();
+      }
+    }
+    if (ourselectedFile == null)
+    {
+      return JalviewFileChooser.CANCEL_OPTION;
+    }
     if (getFileFilter() instanceof JalviewFileFilter)
     {
       JalviewFileFilter jvf = (JalviewFileFilter) getFileFilter();
 
-      if (!jvf.accept(getSelectedFile()))
+      if (!jvf.accept(ourselectedFile))
       {
-        String withExtension = getSelectedFile() + "."
+        String withExtension = getSelectedFile().getName() + "."
                 + jvf.getAcceptableExtension();
-        setSelectedFile(new File(withExtension));
+        ourselectedFile = (new File(getCurrentDirectory(), withExtension));
+        setSelectedFile(ourselectedFile);
       }
     }
     // TODO: ENSURE THAT FILES SAVED WITH A ':' IN THE NAME ARE REFUSED AND THE
     // USER PROMPTED FOR A NEW FILENAME
     if ((ret == JalviewFileChooser.APPROVE_OPTION)
-            && getSelectedFile().exists())
+            && ourselectedFile.exists())
     {
       int confirm = JvOptionPane.showConfirmDialog(parent,
               MessageManager.getString("label.overwrite_existing_file"),
@@ -373,8 +411,8 @@ public class JalviewFileChooser extends JFileChooser
         }
       });
 
-      this.setBorder(new javax.swing.border.TitledBorder(MessageManager
-              .getString("label.recently_opened")));
+      this.setBorder(new javax.swing.border.TitledBorder(
+              MessageManager.getString("label.recently_opened")));
 
       final JScrollPane scroller = new JScrollPane(list);
 
@@ -400,8 +438,8 @@ public class JalviewFileChooser extends JFileChooser
         @Override
         public void run()
         {
-          scroller.getHorizontalScrollBar().setValue(
-                  scroller.getHorizontalScrollBar().getMaximum());
+          scroller.getHorizontalScrollBar()
+                  .setValue(scroller.getHorizontalScrollBar().getMaximum());
         }
       });