Formatting

[jalview.git] / src / jalview / io / JalviewFileView.java

diff --git a/src/jalview/io/JalviewFileView.java b/src/jalview/io/JalviewFileView.java
index 4df6576..b32cbb6 100755 (executable)
--- a/src/jalview/io/JalviewFileView.java
+++ b/src/jalview/io/JalviewFileView.java
@@ -1,33 +1,36 @@
 /*\r
-* Jalview - A Sequence Alignment Editor and Viewer\r
-* Copyright (C) 2005 AM Waterhouse, J Procter, G Barton, M Clamp, S Searle\r
-*\r
-* This program is free software; you can redistribute it and/or\r
-* modify it under the terms of the GNU General Public License\r
-* as published by the Free Software Foundation; either version 2\r
-* of the License, or (at your option) any later version.\r
-*\r
-* This program is distributed in the hope that it will be useful,\r
-* but WITHOUT ANY WARRANTY; without even the implied warranty of\r
-* MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE.  See the\r
-* GNU General Public License for more details.\r
-*\r
-* You should have received a copy of the GNU General Public License\r
-* along with this program; if not, write to the Free Software\r
-* Foundation, Inc., 51 Franklin Street, Fifth Floor, Boston, MA  02110-1301, USA\r
-*/\r
-\r
+ * Jalview - A Sequence Alignment Editor and Viewer\r
+ * Copyright (C) 2007 AM Waterhouse, J Procter, G Barton, M Clamp, S Searle\r
+ *\r
+ * This program is free software; you can redistribute it and/or\r
+ * modify it under the terms of the GNU General Public License\r
+ * as published by the Free Software Foundation; either version 2\r
+ * of the License, or (at your option) any later version.\r
+ *\r
+ * This program is distributed in the hope that it will be useful,\r
+ * but WITHOUT ANY WARRANTY; without even the implied warranty of\r
+ * MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE.  See the\r
+ * GNU General Public License for more details.\r
+ *\r
+ * You should have received a copy of the GNU General Public License\r
+ * along with this program; if not, write to the Free Software\r
+ * Foundation, Inc., 51 Franklin Street, Fifth Floor, Boston, MA  02110-1301, USA\r
+ */\r
 package jalview.io;\r
 \r
-import javax.swing.filechooser.FileView;\r
-import javax.swing.*;\r
 import java.io.*;\r
 import java.util.*;\r
 \r
-public class JalviewFileView extends FileView\r
+import javax.swing.*;\r
+import javax.swing.filechooser.*;\r
+\r
+public class JalviewFileView\r
+    extends FileView\r
 {\r
   static Hashtable alignSuffix = new Hashtable();\r
-  static{\r
+\r
+  static\r
+  {\r
     alignSuffix.put("fasta", "Fasta file");\r
     alignSuffix.put("fa", "Fasta file");\r
     alignSuffix.put("fastq", "Fasta file");\r
@@ -36,7 +39,9 @@ public class JalviewFileView extends FileView
     alignSuffix.put("pfam", "PFAM file");\r
     alignSuffix.put("aln", "Clustal file");\r
     alignSuffix.put("pir", "PIR file");\r
+    alignSuffix.put("jar", "Jalview file");\r
   }\r
+\r
   public String getTypeDescription(File f)\r
   {\r
     String extension = getExtension(f);\r
@@ -49,6 +54,7 @@ public class JalviewFileView extends FileView
         type = alignSuffix.get(extension).toString();\r
       }\r
     }\r
+\r
     return type;\r
   }\r
 \r
@@ -64,35 +70,42 @@ public class JalviewFileView extends FileView
         icon = createImageIcon("/images/file.png");\r
       }\r
     }\r
+\r
     return icon;\r
   }\r
 \r
-\r
   /*\r
    * Get the extension of a file.\r
    */\r
-  public static String getExtension(File f) {\r
-      String ext = null;\r
-      String s = f.getName();\r
-      int i = s.lastIndexOf('.');\r
+  public static String getExtension(File f)\r
+  {\r
+    String ext = null;\r
+    String s = f.getName();\r
+    int i = s.lastIndexOf('.');\r
 \r
-      if (i > 0 &&  i < s.length() - 1) {\r
-          ext = s.substring(i+1).toLowerCase();\r
-      }\r
-      return ext;\r
-  }\r
+    if ( (i > 0) && (i < (s.length() - 1)))\r
+    {\r
+      ext = s.substring(i + 1).toLowerCase();\r
+    }\r
 \r
-  /** Returns an ImageIcon, or null if the path was invalid. */\r
-  protected static ImageIcon createImageIcon(String path) {\r
-      java.net.URL imgURL = JalviewFileView.class.getResource(path);\r
-      if (imgURL != null) {\r
-          return new ImageIcon(imgURL);\r
-      } else {\r
-          System.err.println("JalviewFileView.createImageIcon: Couldn't find file: " + path);\r
-          return null;\r
-      }\r
+    return ext;\r
   }\r
 \r
-}\r
+  /** Returns an ImageIcon, or null if the path was invalid. */\r
+  protected static ImageIcon createImageIcon(String path)\r
+  {\r
+    java.net.URL imgURL = JalviewFileView.class.getResource(path);\r
 \r
+    if (imgURL != null)\r
+    {\r
+      return new ImageIcon(imgURL);\r
+    }\r
+    else\r
+    {\r
+      System.err.println(\r
+          "JalviewFileView.createImageIcon: Couldn't find file: " + path);\r
 \r
+      return null;\r
+    }\r
+  }\r
+}\r