-/*\r
-* Jalview - A Sequence Alignment Editor and Viewer\r
-* Copyright (C) 2005 AM Waterhouse, J Procter, G Barton, M Clamp, S Searle\r
-*\r
-* This program is free software; you can redistribute it and/or\r
-* modify it under the terms of the GNU General Public License\r
-* as published by the Free Software Foundation; either version 2\r
-* of the License, or (at your option) any later version.\r
-*\r
-* This program is distributed in the hope that it will be useful,\r
-* but WITHOUT ANY WARRANTY; without even the implied warranty of\r
-* MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the\r
-* GNU General Public License for more details.\r
-*\r
-* You should have received a copy of the GNU General Public License\r
-* along with this program; if not, write to the Free Software\r
-* Foundation, Inc., 51 Franklin Street, Fifth Floor, Boston, MA 02110-1301, USA\r
-*/\r
-\r
-package jalview.io;\r
-\r
-import javax.swing.filechooser.FileView;\r
-import javax.swing.*;\r
-import java.io.*;\r
-import java.util.*;\r
-\r
-public class JalviewFileView extends FileView\r
-{\r
- static Hashtable alignSuffix = new Hashtable();\r
- static{\r
- alignSuffix.put("fasta", "Fasta file");\r
- alignSuffix.put("fa", "Fasta file");\r
- alignSuffix.put("fastq", "Fasta file");\r
- alignSuffix.put("blc", "BLC file");\r
- alignSuffix.put("msf", "MSF file");\r
- alignSuffix.put("pfam", "PFAM file");\r
- alignSuffix.put("aln", "Clustal file");\r
- alignSuffix.put("pir", "PIR file");\r
- }\r
- public String getTypeDescription(File f)\r
- {\r
- String extension = getExtension(f);\r
- String type = null;\r
-\r
- if (extension != null)\r
- {\r
- if (alignSuffix.containsKey(extension))\r
- {\r
- type = alignSuffix.get(extension).toString();\r
- }\r
- }\r
- return type;\r
- }\r
-\r
- public Icon getIcon(File f)\r
- {\r
- String extension = getExtension(f);\r
- Icon icon = null;\r
-\r
- if (extension != null)\r
- {\r
- if (alignSuffix.containsKey(extension))\r
- {\r
- icon = createImageIcon("/images/file.png");\r
- }\r
- }\r
- return icon;\r
- }\r
-\r
-\r
- /*\r
- * Get the extension of a file.\r
- */\r
- public static String getExtension(File f) {\r
- String ext = null;\r
- String s = f.getName();\r
- int i = s.lastIndexOf('.');\r
-\r
- if (i > 0 && i < s.length() - 1) {\r
- ext = s.substring(i+1).toLowerCase();\r
- }\r
- return ext;\r
- }\r
-\r
- /** Returns an ImageIcon, or null if the path was invalid. */\r
- protected static ImageIcon createImageIcon(String path) {\r
- java.net.URL imgURL = JalviewFileView.class.getResource(path);\r
- if (imgURL != null) {\r
- return new ImageIcon(imgURL);\r
- } else {\r
- System.err.println("JalviewFileView.createImageIcon: Couldn't find file: " + path);\r
- return null;\r
- }\r
- }\r
-\r
-}\r
-\r
-\r
+/*
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.9)
+ * Copyright (C) 2015 The Jalview Authors
+ *
+ * This file is part of Jalview.
+ *
+ * Jalview is free software: you can redistribute it and/or
+ * modify it under the terms of the GNU General Public License
+ * as published by the Free Software Foundation, either version 3
+ * of the License, or (at your option) any later version.
+ *
+ * Jalview is distributed in the hope that it will be useful, but
+ * WITHOUT ANY WARRANTY; without even the implied warranty
+ * of MERCHANTABILITY or FITNESS FOR A PARTICULAR
+ * PURPOSE. See the GNU General Public License for more details.
+ *
+ * You should have received a copy of the GNU General Public License
+ * along with Jalview. If not, see <http://www.gnu.org/licenses/>.
+ * The Jalview Authors are detailed in the 'AUTHORS' file.
+ */
+package jalview.io;
+
+import java.io.File;
+import java.util.Hashtable;
+
+import javax.swing.Icon;
+import javax.swing.ImageIcon;
+import javax.swing.filechooser.FileView;
+
+public class JalviewFileView extends FileView
+{
+ static Hashtable alignSuffix = new Hashtable();
+
+ static
+ {
+ // TODO: these names should come from the FormatAdapter lists for
+ // readable/writable extensions
+ alignSuffix.put("amsa", "AMSA file");
+ alignSuffix.put("fasta", "Fasta file");
+ alignSuffix.put("fa", "Fasta file");
+ alignSuffix.put("fastq", "Fasta file");
+ alignSuffix.put("mfa", "Fasta file");
+ alignSuffix.put("blc", "BLC file");
+ alignSuffix.put("msf", "MSF file");
+ alignSuffix.put("pfam", "PFAM file");
+ alignSuffix.put("aln", "Clustal file");
+ alignSuffix.put("pir", "PIR file");
+ alignSuffix.put("jar", "Jalview Project file (old)");
+ alignSuffix.put("jvp", "Jalview Project file");
+ alignSuffix.put("amsa", "AMSA file");
+ alignSuffix.put("sto", "Stockholm File");
+ alignSuffix.put("stk", "Stockholm File");
+ alignSuffix.put("sto", "Stockholm File");
+ }
+
+ public String getTypeDescription(File f)
+ {
+ String extension = getExtension(f);
+ String type = null;
+
+ if (extension != null)
+ {
+ if (alignSuffix.containsKey(extension))
+ {
+ type = alignSuffix.get(extension).toString();
+ }
+ }
+
+ return type;
+ }
+
+ public Icon getIcon(File f)
+ {
+ String extension = getExtension(f);
+ Icon icon = null;
+
+ if (extension != null)
+ {
+ if (alignSuffix.containsKey(extension))
+ {
+ icon = createImageIcon("/images/file.png");
+ }
+ }
+
+ return icon;
+ }
+
+ /*
+ * Get the extension of a file.
+ */
+ public static String getExtension(File f)
+ {
+ String ext = null;
+ String s = f.getName();
+ int i = s.lastIndexOf('.');
+
+ if ((i > 0) && (i < (s.length() - 1)))
+ {
+ ext = s.substring(i + 1).toLowerCase();
+ }
+
+ return ext;
+ }
+
+ /** Returns an ImageIcon, or null if the path was invalid. */
+ protected static ImageIcon createImageIcon(String path)
+ {
+ java.net.URL imgURL = JalviewFileView.class.getResource(path);
+
+ if (imgURL != null)
+ {
+ return new ImageIcon(imgURL);
+ }
+ else
+ {
+ System.err
+ .println("JalviewFileView.createImageIcon: Couldn't find file: "
+ + path);
+
+ return null;
+ }
+ }
+}
git://source.jalview.org / jalview.git / blobdiff