formatting

[jalview.git] / src / jalview / io / MSFfile.java

diff --git a/src/jalview/io/MSFfile.java b/src/jalview/io/MSFfile.java
index 6b584a8..32cbb02 100755 (executable)
--- a/src/jalview/io/MSFfile.java
+++ b/src/jalview/io/MSFfile.java
@@ -217,7 +217,7 @@ public class MSFfile extends AlignFile
 
     StringBuffer out = new StringBuffer("!!" + (is_NA ? "NA" : "AA")
             + "_MULTIPLE_ALIGNMENT 1.0");
-     // TODO: JBPNote : Jalview doesn't remember NA or AA yet.
+    // TODO: JBPNote : Jalview doesn't remember NA or AA yet.
     out.append(newline);
     out.append(newline);
     int max = 0;
@@ -228,7 +228,7 @@ public class MSFfile extends AlignFile
     {
       // Replace all internal gaps with . and external spaces with ~
       s[i] = new Sequence(seqs[i].getName(), seqs[i].getSequenceAsString()
-              .replace('-', '.'), seqs[i].getStart(),seqs[i].getEnd());
+              .replace('-', '.'), seqs[i].getStart(), seqs[i].getEnd());
 
       StringBuffer sb = new StringBuffer();
       sb.append(s[i].getSequence());
@@ -301,7 +301,7 @@ public class MSFfile extends AlignFile
 
       idBlock[i] = new String("Len: "
               + maxLenpad.form(s[i].getSequence().length) + "  Check: "
-              + maxChkpad.form(checksums[i]) + "  Weight: 1.00"+newline);
+              + maxChkpad.form(checksums[i]) + "  Weight: 1.00" + newline);
 
       if (s[i].getName().length() > maxid)
       {
@@ -335,7 +335,8 @@ public class MSFfile extends AlignFile
 
     maxid++;
     out.append(newline);
-    out.append(newline);out.append("//");
+    out.append(newline);
+    out.append("//");
     out.append(newline);
     out.append(newline);
     int len = 50;