JAL-629 Fix --tempfac. Hide non-working --notempfac. Add --scale, --width, --height...

[jalview.git] / src / jalview / io / StructureFile.java

diff --git a/src/jalview/io/StructureFile.java b/src/jalview/io/StructureFile.java
index fb416db..61b3d1d 100644 (file)
--- a/src/jalview/io/StructureFile.java
+++ b/src/jalview/io/StructureFile.java
@@ -70,7 +70,7 @@ public abstract class StructureFile extends AlignFile
 
   private boolean pdbIdAvailable;
 
-  private StructureImportSettings.TFType temperatureFactorType = TFType.DEFAULT;
+  private TFType temperatureFactorType = TFType.DEFAULT;
 
   private String paeMatrix = null;
 
@@ -91,12 +91,12 @@ public abstract class StructureFile extends AlignFile
     return paeMatrix != null;
   }
 
-  public void setTemperatureFactorType(StructureImportSettings.TFType t)
+  public void setTemperatureFactorType(TFType t)
   {
     this.temperatureFactorType = t;
   }
 
-  public StructureImportSettings.TFType getTemperatureFactorType()
+  public TFType getTemperatureFactorType()
   {
     return temperatureFactorType;
   }
@@ -118,7 +118,7 @@ public abstract class StructureFile extends AlignFile
   }
 
   public StructureFile(Object inFile, DataSourceType sourceType,
-          StructureImportSettings.TFType tempfacType) throws IOException
+          TFType tempfacType) throws IOException
   {
     super(false, inFile, sourceType);
     this.setTemperatureFactorType(tempfacType);