JAL-1926 JAL-2106 fix name for flag controlling addition of secondary structure annot...

[jalview.git] / src / jalview / io / StructureFile.java

diff --git a/src/jalview/io/StructureFile.java b/src/jalview/io/StructureFile.java
index de4affa..b2e5b23 100644 (file)
--- a/src/jalview/io/StructureFile.java
+++ b/src/jalview/io/StructureFile.java
@@ -70,7 +70,7 @@ public abstract class StructureFile extends AlignFile
     this.visibleChainAnnotation = StructureImportSettings
             .isVisibleChainAnnotation();
     this.predictSecondaryStructure = StructureImportSettings
-            .isPredictSecondaryStructure();
+            .isProcessSecondaryStructure();
     this.externalSecondaryStructure = StructureImportSettings
             .isExternalSecondaryStructure();
 
@@ -271,7 +271,7 @@ public abstract class StructureFile extends AlignFile
         StructureImportSettings.setShowSeqFeatures(false);
         StructureImportSettings.setVisibleChainAnnotation(false);
         StructureImportSettings
-                .setPredictSecondaryStructure(predictSecondaryStructure);
+                .setProcessSecondaryStructure(predictSecondaryStructure);
         StructureImportSettings
                 .setExternalSecondaryStructure(externalSecondaryStructure);
         Object jmf = constructor.newInstance(args);