import java.util.regex.Matcher;
import java.util.regex.Pattern;
-import javax.xml.parsers.ParserConfigurationException;
-
-import org.xml.sax.SAXException;
-
-import fr.orsay.lri.varna.exceptions.ExceptionFileFormatOrSyntax;
-import fr.orsay.lri.varna.exceptions.ExceptionLoadingFailed;
-import fr.orsay.lri.varna.exceptions.ExceptionPermissionDenied;
-import fr.orsay.lri.varna.exceptions.ExceptionUnmatchedClosingParentheses;
-
/**
* A file parse for T-Coffee score ascii format. This file contains the
* alignment consensus for each resude in any sequence.
* @author Paolo Di Tommaso
*
*/
-public class TCoffeeScoreFile extends AlignFile {
-
- public TCoffeeScoreFile(String inFile, String type) throws IOException, ExceptionFileFormatOrSyntax, ParserConfigurationException, SAXException, ExceptionPermissionDenied, ExceptionLoadingFailed, InterruptedException, ExceptionUnmatchedClosingParentheses
+public class TCoffeeScoreFile extends AlignFile
+{
+
+ public TCoffeeScoreFile(String inFile, String type) throws IOException
{
super(inFile, type);
}
- public TCoffeeScoreFile(FileParse source) throws IOException, ExceptionFileFormatOrSyntax, ParserConfigurationException, SAXException, ExceptionPermissionDenied, ExceptionLoadingFailed, InterruptedException, ExceptionUnmatchedClosingParentheses
+ public TCoffeeScoreFile(FileParse source) throws IOException
{
super(source);
}