Merge branch 'jims/bug/JAL-4298_java_console_causing_hang_at_startup' into develop

[jalview.git] / src / jalview / io / VamsasAppDatastore.java

diff --git a/src/jalview/io/VamsasAppDatastore.java b/src/jalview/io/VamsasAppDatastore.java
index c3776d3..46b75c8 100644 (file)
--- a/src/jalview/io/VamsasAppDatastore.java
+++ b/src/jalview/io/VamsasAppDatastore.java
@@ -151,7 +151,7 @@ public class VamsasAppDatastore
   private void buildSkipList()
   {
     skipList = new Hashtable();
-    AlignFrame[] al = Desktop.getAlignFrames();
+    AlignFrame[] al = Desktop.getDesktopAlignFrames();
     for (int f = 0; al != null && f < al.length; f++)
     {
       skipList.put(al[f].getViewport().getSequenceSetId(), al[f]);