jalview alignment titles are preserved.

[jalview.git] / src / jalview / io / VamsasDatastore.java

diff --git a/src/jalview/io/VamsasDatastore.java b/src/jalview/io/VamsasDatastore.java
index 63a3e52..c9d5994 100755 (executable)
--- a/src/jalview/io/VamsasDatastore.java
+++ b/src/jalview/io/VamsasDatastore.java
@@ -145,9 +145,10 @@ public class VamsasDatastore {
   /**
    * put the alignment viewed by AlignViewport into cdoc.
    * 
-   * @param av
+   * @param av alignViewport to be stored
+   * @param aFtitle title for alignment
    */
-  public void storeVAMSAS(AlignViewport av) {
+  public void storeVAMSAS(AlignViewport av, String aFtitle) {
     try
     {
       jalview.datamodel.AlignmentI jal = av.getAlignment();
@@ -292,6 +293,13 @@ public class VamsasDatastore {
         // sensible source
         // here
         dataset.addAlignment(alignment);
+        {
+          Property title = new Property();
+          title.setName("jalview:AlTitle");
+          title.setType("string");
+          title.setContent(aFtitle);
+          alignment.addProperty(title);
+        }
         alignment.setGapChar(String.valueOf(av.getGapCharacter()));
         AlignmentSequence alseq = null;
         for (int i = 0; i < jal.getHeight(); i++)