JAL-1705 derive transcript sequences from gene sequence/GFF; handle CDS

[jalview.git] / src / jalview / io / gff / GffHelperBase.java

diff --git a/src/jalview/io/gff/GffHelperBase.java b/src/jalview/io/gff/GffHelperBase.java
index d4a5358..499fa7b 100644 (file)
--- a/src/jalview/io/gff/GffHelperBase.java
+++ b/src/jalview/io/gff/GffHelperBase.java
@@ -335,6 +335,8 @@ public abstract class GffHelperBase implements GffHelperI
 
       sf.setStrand(gff[STRAND_COL]);
 
+      sf.setPhase(gff[PHASE_COL]);
+
       if (attributes != null)
       {
         /*