JAL-2738 one constant in codebase for "alleles" attribute of

[jalview.git] / src / jalview / io / vcf / VCFLoader.java

diff --git a/src/jalview/io/vcf/VCFLoader.java b/src/jalview/io/vcf/VCFLoader.java
index e725a22..13966f4 100644 (file)
--- a/src/jalview/io/vcf/VCFLoader.java
+++ b/src/jalview/io/vcf/VCFLoader.java
@@ -17,6 +17,7 @@ import jalview.datamodel.SequenceFeature;
 import jalview.datamodel.SequenceI;
 import jalview.ext.ensembl.EnsemblMap;
 import jalview.ext.htsjdk.VCFReader;
+import jalview.io.gff.Gff3Helper;
 import jalview.io.gff.SequenceOntologyI;
 import jalview.util.MapList;
 import jalview.util.MappingUtils;
@@ -361,7 +362,7 @@ public class VCFLoader
     SequenceFeature sf = new SequenceFeature(type, alleles, featureStart,
             featureEnd, score, "VCF");
 
-    sf.setValue("alleles", alleles);
+    sf.setValue(Gff3Helper.ALLELES, alleles);
 
     Map<String, Object> atts = variant.getAttributes();
     for (Entry<String, Object> att : atts.entrySet())