package jalview.io.xdb.genbank;
/**
- * <p>A nucleotide sequence identification number that represents a single,
+ * <p>
+ * A nucleotide sequence identification number that represents a single,
* specific sequence in the GenBank database. This identification number uses
- * the accession.version format implemented by GenBank/EMBL/DDBJ in
- * February 1999.</p>
- * <p>If there is any change to the sequence data (even a single base), the
- * version number will be increased, e.g., U12345.1 → U12345.2, but the
- * accession portion will remain stable.</p>
- * <p>The accession.version system of sequence identifiers runs parallel to
- * the GI number system, i.e., when any change is made to a sequence, it
- * receives a new GI number AND an increase to its version number.</p>
- * <p>For more information, see section 1.3.2 of the GenBank 111.0 release
- * notes, and section 3.4.7 of the current GenBank release notes.</p>
- * <p>A Sequence Revision History tool is available to track the various GI
- * numbers, version numbers, and update dates for sequences that appeared in
- * a specific GenBank record (more information and example).</p>
- * <p>More details about sequence identification numbers and the difference
- * between GI number and version are provided in Sequence Identifiers:
- * A Historical Note.</p>
- * <p>Entrez Search Field: use the default setting of "All Fields"</p>
+ * the accession.version format implemented by GenBank/EMBL/DDBJ in February
+ * 1999.
+ * </p>
+ * <p>
+ * If there is any change to the sequence data (even a single base), the version
+ * number will be increased, e.g., U12345.1 → U12345.2, but the accession
+ * portion will remain stable.
+ * </p>
+ * <p>
+ * The accession.version system of sequence identifiers runs parallel to the GI
+ * number system, i.e., when any change is made to a sequence, it receives a new
+ * GI number AND an increase to its version number.
+ * </p>
+ * <p>
+ * For more information, see section 1.3.2 of the GenBank 111.0 release notes,
+ * and section 3.4.7 of the current GenBank release notes.
+ * </p>
+ * <p>
+ * A Sequence Revision History tool is available to track the various GI
+ * numbers, version numbers, and update dates for sequences that appeared in a
+ * specific GenBank record (more information and example).
+ * </p>
+ * <p>
+ * More details about sequence identification numbers and the difference between
+ * GI number and version are provided in Sequence Identifiers: A Historical
+ * Note.
+ * </p>
+ * <p>
+ * Entrez Search Field: use the default setting of "All Fields"
+ * </p>
* <h1>GI</h1>
- * <p>"GenInfo Identifier" sequence identification number, in this case, for
- * the nucleotide sequence. If a sequence changes in any way, a new GI number
- * will be assigned.</p>
- * <p>A separate GI number is also assigned to each protein translation within
- * a nucleotide sequence record, and a new GI is assigned if the protein
- * translation changes in any way (see below).</p>
- * <p>GI sequence identifiers run parallel to the new accession.version system
- * of sequence identifiers. For more information, see the description of Version,
- * above, and section 3.4.7 of the current GenBank release notes.</p>
- * <p>A Sequence Revision History tool is available to track the various GI
+ * <p>
+ * "GenInfo Identifier" sequence identification number, in this case, for the
+ * nucleotide sequence. If a sequence changes in any way, a new GI number will
+ * be assigned.
+ * </p>
+ * <p>
+ * A separate GI number is also assigned to each protein translation within a
+ * nucleotide sequence record, and a new GI is assigned if the protein
+ * translation changes in any way (see below).
+ * </p>
+ * <p>
+ * GI sequence identifiers run parallel to the new accession.version system of
+ * sequence identifiers. For more information, see the description of Version,
+ * above, and section 3.4.7 of the current GenBank release notes.
+ * </p>
+ * <p>
+ * A Sequence Revision History tool is available to track the various GI
* numbers, version numbers, and update dates for sequences that appeared in a
- * specific GenBank record (more information and example).</p>
- * <p>More details about sequence identification numbers and the difference
- * between GI number and version are provided in Sequence Identifiers: A
- * Historical Note.</p>
- * <p>Entrez Search Field: use the default setting of "All Fields"</p>
+ * specific GenBank record (more information and example).
+ * </p>
+ * <p>
+ * More details about sequence identification numbers and the difference between
+ * GI number and version are provided in Sequence Identifiers: A Historical
+ * Note.
+ * </p>
+ * <p>
+ * Entrez Search Field: use the default setting of "All Fields"
+ * </p>
+ *
* @author Dieval Guizelini
* @see Entry
*/
-public class GenBankVersion {
- private String version = "";
- private String gi = "";
-
- public GenBankVersion() {
- }
+public class GenBankVersion
+{
+ private String version = "";
+ private String gi = "";
- /**
- * @return the version
- */
- public String getVersion() {
- return version;
- }
+ public GenBankVersion()
+ {
+ }
- /**
- * @param version the version to set
- */
- public void setVersion(String version) {
- this.version = version;
- }
+ /**
+ * @return the version
+ */
+ public String getVersion()
+ {
+ return version;
+ }
- /**
- * @return the gi
- */
- public String getGI() {
- return gi;
- }
+ /**
+ * @param version
+ * the version to set
+ */
+ public void setVersion(String version)
+ {
+ this.version = version;
+ }
- /**
- * @param gi the gi to set
- */
- public void setGI(String gi) {
- this.gi = gi;
- }
+ /**
+ * @return the gi
+ */
+ public String getGI()
+ {
+ return gi;
+ }
+ /**
+ * @param gi
+ * the gi to set
+ */
+ public void setGI(String gi)
+ {
+ this.gi = gi;
+ }
- /**
- * Version section in GenBank File Format is text with two fields (version and GI).
- *
- * @return version+" "+gi
- */
- @Override
- public String toString() {
- return String.format("%s %s",version,gi);
- }
+ /**
+ * Version section in GenBank File Format is text with two fields (version and
+ * GI).
+ *
+ * @return version+" "+gi
+ */
+ @Override
+ public String toString()
+ {
+ return String.format("%s %s", version, gi);
+ }
}
git://source.jalview.org / jalview.git / blobdiff