package jalview.javascript;
-import java.util.ArrayList;
-import java.util.Enumeration;
-
+import java.net.URL;
import jalview.appletgui.AlignFrame;
import jalview.appletgui.AlignViewport;
import jalview.bin.JalviewLite;
import jalview.structure.SelectionSource;
import netscape.javascript.JSObject;
-public class JsSelectionSender implements
+public class JsSelectionSender extends JSFunctionExec implements
jalview.structure.SelectionListener, JsCallBack
{
- JalviewLite jvlite;
AlignFrame _af;
public JsSelectionSender(JalviewLite jvlite, AlignFrame af,
String listener)
{
- this.jvlite = jvlite;
+ super(jvlite);
_af = af;
_listener = listener;
}
.getSequenceSetId());
for (int a = 0; a < aps.length; a++)
{
+ System.out.println("Selection: testing source alignPanel : "
+ + aps[a].getName());
if (aps[a].av == source)
{
src = aps[a].alignFrame;
System.err.println("Unhandled selection source !");
return;
}
- JSObject jsoWindow = JSObject.getWindow(jvlite);
String[] seqs = new String[]
{};
String[] cols = new String[]
{};
- int strt = 0, end = src.alignPanel.av.getAlignment().getWidth();
+ int strt = 0, end = (src == null) ? -1 : src.alignPanel.av
+ .getAlignment().getWidth();
if (seqsel != null && seqsel.getSize() > 0)
{
seqs = new String[seqsel.getSize()];
{
strt = seqsel.getStartRes();
}
- if (end > seqsel.getEndRes())
+ if (end==-1 || end > seqsel.getEndRes())
{
end = seqsel.getEndRes();
}
}
if (colsel != null && colsel.size() > 0)
{
+ if (end == -1)
+ {
+ end = colsel.getMax() + 1;
+ }
cols = new String[colsel.getSelected().size()];
int d = 0, r = -1;
for (int i = 0; i < cols.length; i++)
{
- cols[i] = ""+(1+((Integer)colsel.getSelected().elementAt(i)).intValue());
+ cols[i] = ""
+ + (1 + ((Integer) colsel.getSelected().elementAt(i))
+ .intValue());
}
}
else
}
System.err.println("Relaying selection to jsfunction:" + _listener);
- jsoWindow.call(
- _listener,
- new Object[]
- { src, setid, jvlite.arrayToSeparatorList(seqs),
- jvlite.arrayToSeparatorList(cols) });
+ executeJavascriptFunction( _listener,
+ new Object[]
+ { src, setid, jvlite.arrayToSeparatorList(seqs),
+ jvlite.arrayToSeparatorList(cols) });
} catch (Exception ex)
{
System.err
.println("Jalview Javascript exec error: Couldn't send selection message using function '"
+ _listener + "'");
+ ex.printStackTrace();
if (ex instanceof netscape.javascript.JSException)
{
- System.err.println("Javascript Exception: "+((netscape.javascript.JSException)ex).getMessage());
+ System.err.println("Javascript Exception: "
+ + ((netscape.javascript.JSException) ex).getCause()
+ .toString());
}
- else {
- ex.printStackTrace();
- };
+
}
}
+
@Override
public AlignFrame getAlignFrame()
{