added tree node property for sequence placeholders.

[jalview.git] / src / jalview / jbappletgui / GTreePanel.java

diff --git a/src/jalview/jbappletgui/GTreePanel.java b/src/jalview/jbappletgui/GTreePanel.java
index 5224f61..3a7112a 100755 (executable)
--- a/src/jalview/jbappletgui/GTreePanel.java
+++ b/src/jalview/jbappletgui/GTreePanel.java
@@ -1,121 +1,136 @@
-package jalview.jbappletgui;\r
-\r
-import java.awt.*;\r
-import java.awt.event.*;\r
-\r
-public class GTreePanel extends Frame\r
-{\r
-  BorderLayout borderLayout1 = new BorderLayout();\r
-  protected ScrollPane scrollPane = new ScrollPane();\r
-  MenuBar jMenuBar1 = new MenuBar();\r
-  Menu jMenu2 = new Menu();\r
-  protected MenuItem fontSize = new MenuItem();\r
-  protected CheckboxMenuItem bootstrapMenu = new CheckboxMenuItem();\r
-  protected CheckboxMenuItem distanceMenu = new CheckboxMenuItem();\r
-  protected CheckboxMenuItem fitToWindow = new CheckboxMenuItem();\r
-  Menu fileMenu = new Menu();\r
-  MenuItem newickOutput = new MenuItem();\r
-\r
-  public GTreePanel()\r
-  {\r
-    try\r
-    {\r
-      jbInit();\r
-      this.setMenuBar(jMenuBar1);\r
-    }\r
-    catch(Exception e)\r
-    {\r
-      e.printStackTrace();\r
-    }\r
-\r
-  }\r
-  private void jbInit() throws Exception\r
-  {\r
-    setLayout(borderLayout1);\r
-    this.setBackground(Color.white);\r
-    this.setFont(new java.awt.Font("Verdana", 0, 12));\r
-    jMenu2.setLabel("View");\r
-    fontSize.setLabel("Font Size - 12");\r
-    fontSize.addActionListener(new java.awt.event.ActionListener()\r
-    {\r
-      public void actionPerformed(ActionEvent e)\r
-      {\r
-        fontSize_actionPerformed(e);\r
-      }\r
-    });\r
-    bootstrapMenu.setLabel("Show Bootstrap values");\r
-    bootstrapMenu.addItemListener(new java.awt.event.ItemListener()\r
-    {\r
-      public void itemStateChanged(ItemEvent e)\r
-      {\r
-        bootstrapMenu_actionPerformed(null);\r
-      }\r
-    });\r
-    distanceMenu.setLabel("Show Distances");\r
-    distanceMenu.addItemListener(new java.awt.event.ItemListener()\r
-    {\r
-      public void itemStateChanged(ItemEvent e)\r
-      {\r
-        distanceMenu_actionPerformed(null);\r
-      }\r
-    });\r
-    fitToWindow.setState(true);\r
-    fitToWindow.setLabel("Fit to window");\r
-    fitToWindow.addItemListener(new java.awt.event.ItemListener()\r
-    {\r
-      public void itemStateChanged(ItemEvent e)\r
-      {\r
-        fitToWindow_actionPerformed(null);\r
-      }\r
-    });\r
-    fileMenu.setLabel("File");\r
-    newickOutput.setLabel("Newick Format");\r
-    newickOutput.addActionListener(new ActionListener()\r
-    {\r
-      public void actionPerformed(ActionEvent actionEvent)\r
-      {\r
-        newickOutput_actionPerformed(actionEvent);\r
-      }\r
-    });\r
-    add(scrollPane, BorderLayout.CENTER);\r
-    jMenuBar1.add(fileMenu);\r
-    jMenuBar1.add(jMenu2);\r
-    jMenu2.add(fitToWindow);\r
-    jMenu2.add(fontSize);\r
-    jMenu2.add(distanceMenu);\r
-    jMenu2.add(bootstrapMenu);\r
-    fileMenu.add(newickOutput);\r
-  }\r
-\r
-\r
-  protected void printMenu_actionPerformed(ActionEvent e)\r
-  {\r
-\r
-  }\r
-\r
-  protected void fontSize_actionPerformed(ActionEvent e)\r
-  {\r
-\r
-  }\r
-\r
-  protected void distanceMenu_actionPerformed(ActionEvent e)\r
-  {\r
-\r
-  }\r
-\r
-  protected void bootstrapMenu_actionPerformed(ActionEvent e)\r
-  {\r
-\r
-  }\r
-\r
-  protected void fitToWindow_actionPerformed(ActionEvent e)\r
-  {\r
-\r
-  }\r
-\r
-  public void newickOutput_actionPerformed(ActionEvent actionEvent)\r
-  {\r
-\r
-  }\r
-\r
-}\r
+package jalview.jbappletgui;
+
+import java.awt.*;
+import java.awt.event.*;
+
+public class GTreePanel extends Frame
+{
+  BorderLayout borderLayout1 = new BorderLayout();
+  protected ScrollPane scrollPane = new ScrollPane();
+  MenuBar jMenuBar1 = new MenuBar();
+  Menu jMenu2 = new Menu();
+  protected MenuItem fontSize = new MenuItem();
+  protected CheckboxMenuItem bootstrapMenu = new CheckboxMenuItem();
+  protected CheckboxMenuItem distanceMenu = new CheckboxMenuItem();
+  protected CheckboxMenuItem placeholdersMenu = new CheckboxMenuItem();
+  protected CheckboxMenuItem fitToWindow = new CheckboxMenuItem();
+  Menu fileMenu = new Menu();
+  MenuItem newickOutput = new MenuItem();
+
+  public GTreePanel()
+  {
+    try
+    {
+      jbInit();
+      this.setMenuBar(jMenuBar1);
+    }
+    catch(Exception e)
+    {
+      e.printStackTrace();
+    }
+
+  }
+  private void jbInit() throws Exception
+  {
+    setLayout(borderLayout1);
+    this.setBackground(Color.white);
+    this.setFont(new java.awt.Font("Verdana", 0, 12));
+    jMenu2.setLabel("View");
+    fontSize.setLabel("Font Size - 12");
+    fontSize.addActionListener(new java.awt.event.ActionListener()
+    {
+      public void actionPerformed(ActionEvent e)
+      {
+        fontSize_actionPerformed(e);
+      }
+    });
+    bootstrapMenu.setLabel("Show Bootstrap values");
+    bootstrapMenu.addItemListener(new java.awt.event.ItemListener()
+    {
+      public void itemStateChanged(ItemEvent e)
+      {
+        bootstrapMenu_actionPerformed(null);
+      }
+    });
+    distanceMenu.setLabel("Show Distances");
+    distanceMenu.addItemListener(new java.awt.event.ItemListener()
+    {
+      public void itemStateChanged(ItemEvent e)
+      {
+        distanceMenu_actionPerformed(null);
+      }
+    });
+    placeholdersMenu.setLabel("Mark Unassociated Leaves");
+    placeholdersMenu.addItemListener(new java.awt.event.ItemListener()
+    {
+      public void itemStateChanged(ItemEvent e)
+      {
+        placeholdersMenu_actionPerformed(null);
+      }
+    });
+    fitToWindow.setState(true);
+    fitToWindow.setLabel("Fit to window");
+    fitToWindow.addItemListener(new java.awt.event.ItemListener()
+    {
+      public void itemStateChanged(ItemEvent e)
+      {
+        fitToWindow_actionPerformed(null);
+      }
+    });
+    fileMenu.setLabel("File");
+    newickOutput.setLabel("Newick format");
+    newickOutput.addActionListener(new ActionListener()
+    {
+      public void actionPerformed(ActionEvent actionEvent)
+      {
+        newickOutput_actionPerformed(actionEvent);
+      }
+    });
+    add(scrollPane, BorderLayout.CENTER);
+    jMenuBar1.add(fileMenu);
+    jMenuBar1.add(jMenu2);
+    jMenu2.add(fitToWindow);
+    jMenu2.add(fontSize);
+    jMenu2.add(distanceMenu);
+    jMenu2.add(bootstrapMenu);
+    jMenu2.add(placeholdersMenu);
+    fileMenu.add(newickOutput);
+  }
+
+
+  protected void printMenu_actionPerformed(ActionEvent e)
+  {
+
+  }
+
+  protected void fontSize_actionPerformed(ActionEvent e)
+  {
+
+  }
+
+  protected void distanceMenu_actionPerformed(ActionEvent e)
+  {
+
+  }
+
+  protected void bootstrapMenu_actionPerformed(ActionEvent e)
+  {
+
+  }
+
+  protected void placeholdersMenu_actionPerformed(ActionEvent e)
+  {
+
+  }
+
+  protected void fitToWindow_actionPerformed(ActionEvent e)
+  {
+
+  }
+
+  public void newickOutput_actionPerformed(ActionEvent actionEvent)
+  {
+
+  }
+
+}