JAL-1553 implementation of column selection by annotation and threshold queries

[jalview.git] / src / jalview / jbgui / GAlignFrame.java

diff --git a/src/jalview/jbgui/GAlignFrame.java b/src/jalview/jbgui/GAlignFrame.java
index 4bf8176..7a5dc54 100755 (executable)
--- a/src/jalview/jbgui/GAlignFrame.java
+++ b/src/jalview/jbgui/GAlignFrame.java
@@ -268,6 +268,8 @@ public class GAlignFrame extends JInternalFrame
 
   JMenuItem annotationColour = new JMenuItem();
 
+  JMenuItem annotationColumn = new JMenuItem();
+
   protected JMenuItem rnahelicesColour = new JMenuItem();
 
   JMenuItem associatedData = new JMenuItem();
@@ -1874,6 +1876,16 @@ public class GAlignFrame extends JInternalFrame
       }
     });
 
+    annotationColumn.setText("Select by annotation...");
+    annotationColumn.addActionListener(new ActionListener()
+    {
+      @Override
+      public void actionPerformed(ActionEvent e)
+      {
+        annotationColumn_actionPerformed(e);
+      }
+    });
+
     rnahelicesColour.setText(MessageManager
             .getString("action.by_rna_helixes"));
     rnahelicesColour.addActionListener(new ActionListener()
@@ -2408,6 +2420,7 @@ public class GAlignFrame extends JInternalFrame
     selectMenu.add(unGroup);
     selectMenu.add(grpsFromSelection);
     selectMenu.add(deleteGroups);
+    selectMenu.add(annotationColumn);
     calculateMenu.add(expandAlignment);
     // TODO - determine if the listenToViewSelections button is needed : see bug
     // JAL-574
@@ -2986,6 +2999,11 @@ public class GAlignFrame extends JInternalFrame
 
   }
 
+  public void annotationColumn_actionPerformed(ActionEvent e)
+  {
+
+  }
+
   public void rnahelicesColour_actionPerformed(ActionEvent e)
   {