FileFormatI further tweaks, clean compile

[jalview.git] / src / jalview / jbgui / GAlignFrame.java

diff --git a/src/jalview/jbgui/GAlignFrame.java b/src/jalview/jbgui/GAlignFrame.java
index b2eb094..73d1b3c 100755 (executable)
--- a/src/jalview/jbgui/GAlignFrame.java
+++ b/src/jalview/jbgui/GAlignFrame.java
@@ -25,6 +25,7 @@ import jalview.api.SplitContainerI;
 import jalview.bin.Cache;
 import jalview.gui.JvSwingUtils;
 import jalview.gui.Preferences;
+import jalview.io.FileFormat;
 import jalview.schemes.ColourSchemeProperty;
 import jalview.util.MessageManager;
 
@@ -136,8 +137,6 @@ public class GAlignFrame extends JInternalFrame
 
   public JCheckBoxMenuItem showSeqFeatures = new JCheckBoxMenuItem();
 
-  public JCheckBoxMenuItem showSeqFeaturesHeight = new JCheckBoxMenuItem();
-
   JMenuItem copy = new JMenuItem();
 
   JMenuItem cut = new JMenuItem();
@@ -246,10 +245,9 @@ public class GAlignFrame extends JInternalFrame
       setJMenuBar(alignFrameMenuBar);
 
       // dynamically fill save as menu with available formats
-      for (int i = 0; i < jalview.io.FormatAdapter.WRITEABLE_FORMATS.length; i++)
+      for (String ff : FileFormat.getWritableFormats())
       {
-        JMenuItem item = new JMenuItem(
-                jalview.io.FormatAdapter.WRITEABLE_FORMATS[i]);
+        JMenuItem item = new JMenuItem(ff);
 
         item.addActionListener(new ActionListener()
         {
@@ -1591,7 +1589,7 @@ public class GAlignFrame extends JInternalFrame
     });
 
     JMenuItem modifyPID = new JMenuItem(
-            MessageManager.getString("label.modify_identity_thereshold"));
+            MessageManager.getString("label.modify_identity_threshold"));
     modifyPID.addActionListener(new ActionListener()
     {
       @Override
@@ -1601,7 +1599,7 @@ public class GAlignFrame extends JInternalFrame
       }
     });
     modifyConservation.setText(MessageManager
-            .getString("label.modify_conservation_thereshold"));
+            .getString("label.modify_conservation_threshold"));
     modifyConservation.addActionListener(new ActionListener()
     {
       @Override
@@ -2520,13 +2518,6 @@ public class GAlignFrame extends JInternalFrame
 
   }
 
-  protected void showSeqFeaturesHeight_actionPerformed(
-          ActionEvent actionEvent)
-  {
-    // TODO Auto-generated method stub
-
-  }
-
   protected void justifyRightMenuItem_actionPerformed(ActionEvent e)
   {
     // TODO Auto-generated method stub