public void run()\r
{\r
String str = textfield.getText();\r
- SequenceI[] sequences = FormatAdapter.readFile(str, "Paste", "FASTA");\r
+ SequenceI[] sequences = new FormatAdapter().readFile(str, "Paste", "FASTA");\r
if(sequences!=null && sequences.length>0)\r
{\r
str = jalview.analysis.AlignSeq.extractGaps(\r