JAL-1713 update from Jalview 2.11.3 develop

[jalview.git] / src / jalview / jbgui / GPreferences.java

diff --git a/src/jalview/jbgui/GPreferences.java b/src/jalview/jbgui/GPreferences.java
index 37ba654..69c0f4d 100755 (executable)
--- a/src/jalview/jbgui/GPreferences.java
+++ b/src/jalview/jbgui/GPreferences.java
@@ -77,6 +77,7 @@ import javax.swing.table.TableCellEditor;
 import javax.swing.table.TableCellRenderer;
 
 import jalview.bin.Cache;
+import jalview.bin.Console;
 import jalview.bin.MemorySetting;
 import jalview.fts.core.FTSDataColumnPreferences;
 import jalview.fts.core.FTSDataColumnPreferences.PreferenceSource;
@@ -268,8 +269,6 @@ public class GPreferences extends JPanel
 
   protected JPasswordField proxyAuthPasswordPB = new JPasswordField();
 
-  protected JTextField defaultBrowser = new JTextField();
-
   protected ButtonGroup proxyType = new ButtonGroup();
 
   protected JRadioButton noProxy = new JRadioButton();
@@ -739,44 +738,9 @@ public class GPreferences extends JPanel
     connectTab = new JPanel();
     connectTab.setLayout(new GridBagLayout());
 
-    // Label for browser text box
-    JLabel browserLabel = new JLabel();
-    browserLabel.setFont(LABEL_FONT);
-    browserLabel.setHorizontalAlignment(SwingConstants.TRAILING);
-    browserLabel.setText(
-            MessageManager.getString("label.default_browser_unix"));
-    defaultBrowser.setFont(LABEL_FONT);
-    defaultBrowser.setText("");
-    final String tooltip = JvSwingUtils.wrapTooltip(true,
-            MessageManager.getString("label.double_click_to_browse"));
-    defaultBrowser.setToolTipText(tooltip);
-    defaultBrowser.addMouseListener(new MouseAdapter()
-    {
-      @Override
-      public void mouseClicked(MouseEvent e)
-      {
-        if (e.getClickCount() > 1)
-        {
-          defaultBrowser_mouseClicked(e);
-        }
-      }
-    });
-
     JPanel proxyPanel = initConnTabProxyPanel();
     initConnTabCheckboxes();
 
-    // Add default Browser text box
-    connectTab.add(browserLabel,
-            new GridBagConstraints(0, 0, 1, 1, 0.0, 0.0,
-                    GridBagConstraints.WEST, GridBagConstraints.NONE,
-                    new Insets(10, 0, 5, 5), 5, 1));
-    defaultBrowser.setFont(LABEL_FONT);
-    defaultBrowser.setText("");
-
-    connectTab.add(defaultBrowser, new GridBagConstraints(1, 0, 1, 1, 1.0,
-            0.0, GridBagConstraints.CENTER, GridBagConstraints.HORIZONTAL,
-            new Insets(10, 0, 5, 10), 30, 1));
-
     // Add proxy server panel
     connectTab.add(proxyPanel, new GridBagConstraints(0, 1, 2, 1, 1.0, 0.0,
             GridBagConstraints.CENTER, GridBagConstraints.HORIZONTAL,
@@ -1817,8 +1781,8 @@ public class GPreferences extends JPanel
   }
 
   /**
-   * Show a dialog for the user to choose a file. Returns the chosen path, or null
-   * on Cancel.
+   * Show a dialog for the user to choose a file. Returns the chosen path, or
+   * null on Cancel.
    * 
    * @return
    */
@@ -2793,7 +2757,7 @@ public class GPreferences extends JPanel
     }
     else
     {
-      Cache.log.error(
+      Console.error(
               "Preset '" + value + "' [key:" + key + "] not implemented");
     }
 
@@ -2813,7 +2777,7 @@ public class GPreferences extends JPanel
               .getSelectedItem();
     } catch (Exception ex)
     {
-      Cache.log.error(
+      Console.error(
               "Problem casting Combo entry to IntKeyStringValueEntry.");
       e = null;
     }
@@ -2831,7 +2795,7 @@ public class GPreferences extends JPanel
         e = (IntKeyStringValueEntry) backupfilesPresetsCombo2.getItemAt(i);
       } catch (Exception ex)
       {
-        Cache.log.error(
+        Console.error(
                 "Problem casting Combo entry to IntKeyStringValueEntry. Skipping item. ");
         continue;
       }
@@ -3279,7 +3243,7 @@ public class GPreferences extends JPanel
         i = ((Integer) s.getValue()).intValue();
       } catch (Exception e)
       {
-        Cache.log.error(
+        Console.error(
                 "Exception casting the initial value of s.getValue()");
       }
     }
@@ -3315,7 +3279,7 @@ public class GPreferences extends JPanel
       i = (Integer) s.getValue();
     } catch (Exception e)
     {
-      Cache.log.error("Failed casting (Integer) JSpinner s.getValue()");
+      Console.error("Failed casting (Integer) JSpinner s.getValue()");
     }
     return i;
   }
@@ -3486,7 +3450,7 @@ public class GPreferences extends JPanel
    * DOCUMENT ME!
    * 
    * @param e
-   *            DOCUMENT ME!
+   *          DOCUMENT ME!
    */
   public void ok_actionPerformed(ActionEvent e)
   {
@@ -3496,7 +3460,7 @@ public class GPreferences extends JPanel
    * DOCUMENT ME!
    * 
    * @param e
-   *            DOCUMENT ME!
+   *          DOCUMENT ME!
    */
   public void cancel_actionPerformed(ActionEvent e)
   {
@@ -3506,7 +3470,7 @@ public class GPreferences extends JPanel
    * DOCUMENT ME!
    * 
    * @param e
-   *            DOCUMENT ME!
+   *          DOCUMENT ME!
    */
   public void annotations_actionPerformed(ActionEvent e)
   {
@@ -3534,11 +3498,6 @@ public class GPreferences extends JPanel
 
   }
 
-  public void defaultBrowser_mouseClicked(MouseEvent e)
-  {
-
-  }
-
   public void linkURLList_keyTyped(KeyEvent e)
   {