* along with this program; if not, write to the Free Software\r
* Foundation, Inc., 51 Franklin Street, Fifth Floor, Boston, MA 02110-1301, USA\r
*/\r
-\r
package jalview.jbgui;\r
\r
-import javax.swing.*;\r
import java.awt.*;\r
-import java.awt.event.ActionListener;\r
-import java.awt.event.ActionEvent;\r
+\r
+import javax.swing.*;\r
import javax.swing.border.TitledBorder;\r
-import java.awt.event.MouseAdapter;\r
-import java.awt.event.MouseEvent;\r
+import java.awt.event.*;\r
+import javax.swing.event.*;\r
+\r
\r
-public class GPreferences\r
- extends JPanel\r
+/**\r
+ * DOCUMENT ME!\r
+ *\r
+ * @author $author$\r
+ * @version $Revision$\r
+ */\r
+public class GPreferences extends JPanel\r
{\r
- public GPreferences()\r
- {\r
- try\r
- {\r
- jbInit();\r
- }\r
- catch (Exception ex)\r
+ JTabbedPane tabbedPane = new JTabbedPane();\r
+\r
+ JButton ok = new JButton();\r
+ JButton cancel = new JButton();\r
+ JPanel okCancelPanel = new JPanel();\r
+ BorderLayout borderLayout1 = new BorderLayout();\r
+ protected JCheckBox quality = new JCheckBox();\r
+ JPanel visualTab = new JPanel();\r
+ protected JCheckBox fullScreen = new JCheckBox();\r
+ protected JCheckBox conservation = new JCheckBox();\r
+ protected JCheckBox identity = new JCheckBox();\r
+ protected JCheckBox annotations = new JCheckBox();\r
+ JLabel gapLabel = new JLabel();\r
+ protected JComboBox colour = new JComboBox();\r
+ JLabel colourLabel = new JLabel();\r
+ JLabel fontLabel = new JLabel();\r
+ protected JComboBox fontSizeCB = new JComboBox();\r
+ protected JComboBox fontStyleCB = new JComboBox();\r
+ protected JComboBox fontNameCB = new JComboBox();\r
+ protected JComboBox gapSymbolCB = new JComboBox();\r
+ protected JCheckBox startupCheckbox = new JCheckBox();\r
+ protected JTextField startupFileTextfield = new JTextField();\r
+ JPanel connectTab = new JPanel();\r
+ JLabel serverLabel = new JLabel();\r
+ protected JList linkURLList = new JList();\r
+ protected JTextField proxyServerTB = new JTextField();\r
+ protected JTextField proxyPortTB = new JTextField();\r
+ JLabel portLabel = new JLabel();\r
+ JLabel browserLabel = new JLabel();\r
+ protected JTextField defaultBrowser = new JTextField();\r
+ JButton newLink = new JButton();\r
+ JButton editLink = new JButton();\r
+ JButton deleteLink = new JButton();\r
+ JScrollPane linkScrollPane = new JScrollPane();\r
+ JPanel linkPanel = new JPanel();\r
+ BorderLayout borderLayout2 = new BorderLayout();\r
+ JPanel editLinkButtons = new JPanel();\r
+ GridLayout gridLayout1 = new GridLayout();\r
+ protected JList linkNameList = new JList();\r
+ JPanel linkPanel2 = new JPanel();\r
+ BorderLayout borderLayout3 = new BorderLayout();\r
+ protected JCheckBox useProxy = new JCheckBox();\r
+ JPanel jPanel1 = new JPanel();\r
+ TitledBorder titledBorder1 = new TitledBorder("Proxy Server");\r
+ TitledBorder titledBorder2 = new TitledBorder("File Output");\r
+ GridBagLayout gridBagLayout2 = new GridBagLayout();\r
+ GridBagLayout gridBagLayout1 = new GridBagLayout();\r
+ GridBagLayout gridBagLayout3 = new GridBagLayout();\r
+ protected JComboBox sortby = new JComboBox();\r
+ JLabel sortLabel = new JLabel();\r
+ JPanel jPanel2 = new JPanel();\r
+ GridLayout gridLayout2 = new GridLayout();\r
+ JPanel jPanel3 = new JPanel();\r
+ JPanel exportTab = new JPanel();\r
+ JLabel epsLabel = new JLabel();\r
+ protected JComboBox epsRendering = new JComboBox();\r
+ JLabel jLabel1 = new JLabel();\r
+ protected JCheckBox blcjv = new JCheckBox();\r
+ protected JCheckBox pileupjv = new JCheckBox();\r
+ protected JCheckBox clustaljv = new JCheckBox();\r
+ protected JCheckBox msfjv = new JCheckBox();\r
+ protected JCheckBox fastajv = new JCheckBox();\r
+ protected JCheckBox pfamjv = new JCheckBox();\r
+ FlowLayout flowLayout1 = new FlowLayout();\r
+ protected JCheckBox pirjv = new JCheckBox();\r
+ JPanel jPanel11 = new JPanel();\r
+ Font verdana11 = new java.awt.Font("Verdana", Font.PLAIN, 11);\r
+ protected JCheckBox seqLimit = new JCheckBox();\r
+ GridLayout gridLayout3 = new GridLayout();\r
+ protected JCheckBox smoothFont = new JCheckBox();\r
+ JPanel calcTab = new JPanel();\r
+ protected JCheckBox autoCalculateConsCheck = new JCheckBox();\r
+ protected JCheckBox padGaps = new JCheckBox();\r
+ protected JCheckBox modellerOutput = new JCheckBox();\r
+ /**\r
+ * Creates a new GPreferences object.\r
+ */\r
+ public GPreferences()\r
{\r
- ex.printStackTrace();\r
+ try\r
+ {\r
+ jbInit();\r
+ }\r
+ catch (Exception ex)\r
+ {\r
+ ex.printStackTrace();\r
+ }\r
}\r
- }\r
\r
- private void jbInit()\r
- throws Exception\r
- {\r
- this.setLayout(borderLayout1);\r
- ok.setText("OK");\r
- ok.addActionListener(new ActionListener()\r
+ /**\r
+ * DOCUMENT ME!\r
+ *\r
+ * @throws Exception DOCUMENT ME!\r
+ */\r
+ private void jbInit() throws Exception\r
{\r
- public void actionPerformed(ActionEvent e)\r
- {\r
- ok_actionPerformed(e);\r
- }\r
- });\r
- cancel.setText("Cancel");\r
- cancel.addActionListener(new ActionListener()\r
- {\r
- public void actionPerformed(ActionEvent e)\r
- {\r
- cancel_actionPerformed(e);\r
- }\r
- });\r
- visual.setLayout(null);\r
- quality.setEnabled(false);\r
- quality.setFont(new java.awt.Font("Verdana", Font.PLAIN, 11));\r
- quality.setHorizontalAlignment(SwingConstants.RIGHT);\r
- quality.setHorizontalTextPosition(SwingConstants.LEFT);\r
- quality.setSelected(true);\r
- quality.setText("Quality");\r
- quality.setBounds(new Rectangle(248, 53, 81, 23));\r
- jPanel2.setBorder(titledBorder1);\r
- jPanel2.setBounds(new Rectangle(9, 20, 442, 241));\r
- jPanel2.setLayout(null);\r
- fullID.setFont(new java.awt.Font("Verdana", Font.PLAIN, 11));\r
- fullID.setHorizontalAlignment(SwingConstants.RIGHT);\r
- fullID.setHorizontalTextPosition(SwingConstants.LEFT);\r
- fullID.setText("Full Sequence ID");\r
- fullID.setBounds(new Rectangle(9, 78, 129, 23));\r
- fullScreen.setFont(new java.awt.Font("Verdana", Font.PLAIN, 11));\r
- fullScreen.setHorizontalAlignment(SwingConstants.RIGHT);\r
- fullScreen.setHorizontalTextPosition(SwingConstants.LEFT);\r
+ this.setLayout(borderLayout1);\r
+ ok.setText("OK");\r
+ ok.addActionListener(new ActionListener()\r
+ {\r
+ public void actionPerformed(ActionEvent e)\r
+ {\r
+ ok_actionPerformed(e);\r
+ }\r
+ });\r
+ cancel.setText("Cancel");\r
+ cancel.addActionListener(new ActionListener()\r
+ {\r
+ public void actionPerformed(ActionEvent e)\r
+ {\r
+ cancel_actionPerformed(e);\r
+ }\r
+ });\r
+ quality.setEnabled(false);\r
+ quality.setFont(verdana11);\r
+ quality.setHorizontalAlignment(SwingConstants.RIGHT);\r
+ quality.setHorizontalTextPosition(SwingConstants.LEFT);\r
+ quality.setSelected(true);\r
+ quality.setText("Quality");\r
+ visualTab.setBorder(new TitledBorder("Open new alignment"));\r
+ visualTab.setLayout(null);\r
+ fullScreen.setFont(verdana11);\r
+ fullScreen.setHorizontalAlignment(SwingConstants.RIGHT);\r
+ fullScreen.setHorizontalTextPosition(SwingConstants.LEFT);\r
+ fullScreen.setMargin(new Insets(2, 2, 2, 0));\r
fullScreen.setText("Maximise Window");\r
- fullScreen.setBounds(new Rectangle(5, 29, 132, 23));\r
conservation.setEnabled(false);\r
- conservation.setFont(new java.awt.Font("Verdana", Font.PLAIN, 11));\r
- conservation.setHorizontalAlignment(SwingConstants.RIGHT);\r
- conservation.setHorizontalTextPosition(SwingConstants.LEFT);\r
- conservation.setSelected(true);\r
- conservation.setText("Conservation");\r
- conservation.setBounds(new Rectangle(137, 53, 113, 23));\r
+ conservation.setFont(verdana11);\r
+ conservation.setHorizontalAlignment(SwingConstants.RIGHT);\r
+ conservation.setHorizontalTextPosition(SwingConstants.LEFT);\r
+ conservation.setSelected(true);\r
+ conservation.setText("Conservation");\r
identity.setEnabled(false);\r
- identity.setFont(new java.awt.Font("Verdana", Font.PLAIN, 11));\r
- identity.setHorizontalAlignment(SwingConstants.RIGHT);\r
- identity.setHorizontalTextPosition(SwingConstants.LEFT);\r
- identity.setSelected(true);\r
- identity.setText("Consensus");\r
- identity.setBounds(new Rectangle(326, 53, 99, 23));\r
- annotations.setFont(new java.awt.Font("Verdana", Font.PLAIN, 11));\r
- annotations.setHorizontalAlignment(SwingConstants.RIGHT);\r
- annotations.setHorizontalTextPosition(SwingConstants.LEFT);\r
+ identity.setFont(verdana11);\r
+ identity.setHorizontalAlignment(SwingConstants.RIGHT);\r
+ identity.setHorizontalTextPosition(SwingConstants.LEFT);\r
+ identity.setSelected(true);\r
+ identity.setText("Consensus");\r
+ annotations.setFont(verdana11);\r
+ annotations.setHorizontalAlignment(SwingConstants.RIGHT);\r
+ annotations.setHorizontalTextPosition(SwingConstants.LEFT);\r
+ annotations.setMargin(new Insets(2, 4, 2, 0));\r
annotations.setSelected(true);\r
- annotations.setText("Show Annotations");\r
- annotations.setBounds(new Rectangle(10, 53, 128, 23));\r
+ annotations.setText("Show Annotations");\r
annotations.addActionListener(new ActionListener()\r
- {\r
- public void actionPerformed(ActionEvent e)\r
- {\r
- annotations_actionPerformed(e);\r
+ {\r
+ public void actionPerformed(ActionEvent e)\r
+ {\r
+ annotations_actionPerformed(e);\r
+ }\r
+ });\r
+ gapLabel.setFont(verdana11);\r
+ gapLabel.setHorizontalAlignment(SwingConstants.RIGHT);\r
+ gapLabel.setText("Gap Symbol ");\r
+ colour.setFont(verdana11);\r
+ colour.setBounds(new Rectangle(171, 180, 155, 21));\r
+ colourLabel.setFont(verdana11);\r
+ colourLabel.setHorizontalAlignment(SwingConstants.RIGHT);\r
+ colourLabel.setText("Colour ");\r
+ fontLabel.setFont(verdana11);\r
+ fontLabel.setHorizontalAlignment(SwingConstants.RIGHT);\r
+ fontLabel.setText("Font ");\r
+ fontSizeCB.setFont(verdana11);\r
+ fontSizeCB.setBounds(new Rectangle(318, 100, 49, 21));\r
+ fontStyleCB.setFont(verdana11);\r
+ fontStyleCB.setBounds(new Rectangle(366, 100, 70, 21));\r
+ fontNameCB.setFont(verdana11);\r
+ fontNameCB.setBounds(new Rectangle(171, 100, 147, 21));\r
+ gapSymbolCB.setFont(verdana11);\r
+ gapSymbolCB.setBounds(new Rectangle(171, 153, 69, 21));\r
+ startupCheckbox.setText("Open file");\r
+ startupCheckbox.setFont(verdana11);\r
+ startupCheckbox.setHorizontalAlignment(SwingConstants.RIGHT);\r
+ startupCheckbox.setHorizontalTextPosition(SwingConstants.LEFT);\r
+ startupCheckbox.setSelected(true);\r
+ startupFileTextfield.setFont(verdana11);\r
+ startupFileTextfield.setBounds(new Rectangle(171, 236, 270, 20));\r
+ startupFileTextfield.addMouseListener(new MouseAdapter()\r
+ {\r
+ public void mouseClicked(MouseEvent e)\r
+ {\r
+ if (e.getClickCount() > 1)\r
+ {\r
+ startupFileTextfield_mouseClicked();\r
+ }\r
+ }\r
+ });\r
+\r
+ connectTab.setLayout(gridBagLayout3);\r
+ serverLabel.setText("Address");\r
+ serverLabel.setHorizontalAlignment(SwingConstants.RIGHT);\r
+ serverLabel.setFont(verdana11);\r
+ proxyServerTB.setFont(verdana11);\r
+ proxyPortTB.setFont(verdana11);\r
+ portLabel.setFont(verdana11);\r
+ portLabel.setHorizontalAlignment(SwingConstants.RIGHT);\r
+ portLabel.setText("Port");\r
+ browserLabel.setFont(new java.awt.Font("SansSerif", 0, 11));\r
+ browserLabel.setHorizontalAlignment(SwingConstants.TRAILING);\r
+ browserLabel.setText("Default Browser (Unix)");\r
+ defaultBrowser.setFont(verdana11);\r
+ defaultBrowser.setText("");\r
+ newLink.setText("New");\r
+ newLink.addActionListener(new java.awt.event.ActionListener() {\r
+ public void actionPerformed(ActionEvent e) {\r
+ newLink_actionPerformed(e);\r
+ }\r
+ });\r
+ editLink.setText("Edit");\r
+ editLink.addActionListener(new java.awt.event.ActionListener() {\r
+ public void actionPerformed(ActionEvent e) {\r
+ editLink_actionPerformed(e);\r
+ }\r
+ });\r
+ deleteLink.setText("Delete");\r
+ deleteLink.addActionListener(new java.awt.event.ActionListener() {\r
+ public void actionPerformed(ActionEvent e) {\r
+ deleteLink_actionPerformed(e);\r
}\r
});\r
- jLabel1.setFont(new java.awt.Font("Verdana", Font.PLAIN, 11));\r
- jLabel1.setHorizontalAlignment(SwingConstants.RIGHT);\r
- jLabel1.setText("Gap Symbol");\r
- jLabel1.setBounds(new Rectangle(41, 142, 76, 15));\r
- colour.setFont(new java.awt.Font("Verdana", Font.PLAIN, 11));\r
- colour.setBounds(new Rectangle(121, 168, 154, 21));\r
- jLabel2.setFont(new java.awt.Font("Verdana", Font.PLAIN, 11));\r
- jLabel2.setHorizontalAlignment(SwingConstants.RIGHT);\r
- jLabel2.setText("Colour");\r
- jLabel2.setBounds(new Rectangle(60, 172, 58, 15));\r
- jLabel3.setFont(new java.awt.Font("Verdana", Font.PLAIN, 11));\r
- jLabel3.setHorizontalAlignment(SwingConstants.RIGHT);\r
- jLabel3.setText("Font");\r
- jLabel3.setBounds(new Rectangle(83, 114, 34, 15));\r
- fontSizeCB.setFont(new java.awt.Font("Verdana", Font.PLAIN, 11));\r
- fontSizeCB.setBounds(new Rectangle(304, 109, 49, 21));\r
- fontStyleCB.setFont(new java.awt.Font("Verdana", Font.PLAIN, 11));\r
- fontStyleCB.setBounds(new Rectangle(353, 109, 80, 21));\r
- fontNameCB.setFont(new java.awt.Font("Verdana", Font.PLAIN, 11));\r
- fontNameCB.setBounds(new Rectangle(121, 109, 183, 21));\r
- gapSymbolCB.setFont(new java.awt.Font("Verdana", Font.PLAIN, 11));\r
- gapSymbolCB.setBounds(new Rectangle(121, 140, 67, 21));\r
- startupCheckbox.setText("Open file");\r
- startupCheckbox.setBounds(new Rectangle(4, 200, 115, 23));\r
- startupCheckbox.addActionListener(new ActionListener()\r
+\r
+ linkURLList.addListSelectionListener(new ListSelectionListener()\r
+ {\r
+ public void valueChanged(ListSelectionEvent e)\r
+ {\r
+ int index = linkURLList.getSelectedIndex();\r
+ linkNameList.setSelectedIndex(index);\r
+ }\r
+ });\r
+\r
+ linkNameList.addListSelectionListener(new ListSelectionListener()\r
+ {\r
+ public void valueChanged(ListSelectionEvent e)\r
+ {\r
+ int index = linkNameList.getSelectedIndex();\r
+ linkURLList.setSelectedIndex(index);\r
+ }\r
+ });\r
+\r
+ linkScrollPane.setBorder(null);\r
+ linkPanel.setBorder(new TitledBorder("URL link from Sequence ID"));\r
+ linkPanel.setLayout(borderLayout2);\r
+ editLinkButtons.setLayout(gridLayout1);\r
+ gridLayout1.setRows(3);\r
+ linkNameList.setFont(verdana11);\r
+ linkNameList.setSelectionMode(ListSelectionModel.SINGLE_SELECTION);\r
+ linkPanel2.setLayout(borderLayout3);\r
+ linkURLList.setFont(verdana11);\r
+ linkURLList.setSelectionMode(ListSelectionModel.SINGLE_SELECTION);\r
+\r
+ defaultBrowser.addMouseListener(new MouseAdapter()\r
{\r
- public void actionPerformed(ActionEvent e)\r
+ public void mouseClicked(MouseEvent e)\r
{\r
- jCheckBox1_actionPerformed(e);\r
+ if (e.getClickCount() > 1)\r
+ {\r
+ defaultBrowser_mouseClicked(e);\r
+ }\r
}\r
});\r
- startupCheckbox.setFont(new java.awt.Font("Verdana", Font.PLAIN, 11));\r
- startupCheckbox.setHorizontalAlignment(SwingConstants.RIGHT);\r
- startupCheckbox.setHorizontalTextPosition(SwingConstants.LEFT);\r
- startupCheckbox.setSelected(true);\r
- startupFileTextfield.setFont(new java.awt.Font("Verdana", Font.PLAIN, 11));\r
- startupFileTextfield.setBounds(new Rectangle(122, 202, 309, 20));\r
- startupFileTextfield.addMouseListener(new MouseAdapter()\r
+ useProxy.setFont(verdana11);\r
+ useProxy.setHorizontalAlignment(SwingConstants.RIGHT);\r
+ useProxy.setHorizontalTextPosition(SwingConstants.LEADING);\r
+ useProxy.setText("Use a proxy server");\r
+ useProxy.addActionListener(new ActionListener()\r
{\r
- public void mouseClicked(MouseEvent e)\r
+ public void actionPerformed(ActionEvent e)\r
{\r
- startupFileTextfield_mouseClicked();\r
+ useProxy_actionPerformed();\r
}\r
});\r
+ jPanel1.setBorder(titledBorder1);\r
+ jPanel1.setLayout(gridBagLayout1);\r
+ sortby.setFont(verdana11);\r
+ sortby.setBounds(new Rectangle(171, 208, 155, 21));\r
+ sortLabel.setFont(verdana11);\r
+ sortLabel.setHorizontalAlignment(SwingConstants.RIGHT);\r
+ sortLabel.setText("Sort by ");\r
+ jPanel2.setBounds(new Rectangle(7, 17, 158, 245));\r
+ jPanel2.setLayout(gridLayout2);\r
+ gridLayout2.setRows(9);\r
+ jPanel3.setBounds(new Rectangle(167, 41, 274, 26));\r
+ exportTab.setLayout(null);\r
+ epsLabel.setFont(verdana11);\r
+ epsLabel.setHorizontalAlignment(SwingConstants.RIGHT);\r
+ epsLabel.setText("EPS Rendering Style");\r
+ epsLabel.setBounds(new Rectangle(9, 31, 140, 24));\r
+ epsRendering.setFont(verdana11);\r
+ epsRendering.setBounds(new Rectangle(154, 34, 187, 21));\r
+ jLabel1.setFont(verdana11);\r
+ jLabel1.setHorizontalAlignment(SwingConstants.CENTER);\r
+ jLabel1.setText("Append /start-end (/15-380)");\r
+ jLabel1.setFont(verdana11);\r
+ fastajv.setFont(verdana11);\r
+ fastajv.setHorizontalAlignment(SwingConstants.LEFT);\r
+ clustaljv.setText("Clustal ");\r
+ blcjv.setText("BLC ");\r
+ fastajv.setText("Fasta ");\r
+ msfjv.setText("MSF ");\r
+ pfamjv.setText("PFAM ");\r
+ pileupjv.setText("Pileup ");\r
+ msfjv.setFont(verdana11);\r
+ msfjv.setHorizontalAlignment(SwingConstants.LEFT);\r
+ pirjv.setText("PIR ");\r
+ jPanel11.setFont(verdana11);\r
+ jPanel11.setBorder(titledBorder2);\r
+ jPanel11.setBounds(new Rectangle(30, 72, 196, 182));\r
+ jPanel11.setLayout(gridLayout3);\r
+ blcjv.setFont(verdana11);\r
+ blcjv.setHorizontalAlignment(SwingConstants.LEFT);\r
+ clustaljv.setFont(verdana11);\r
+ clustaljv.setHorizontalAlignment(SwingConstants.LEFT);\r
+ pfamjv.setFont(verdana11);\r
+ pfamjv.setHorizontalAlignment(SwingConstants.LEFT);\r
+ pileupjv.setFont(verdana11);\r
+ pileupjv.setHorizontalAlignment(SwingConstants.LEFT);\r
+ pirjv.setFont(verdana11);\r
+ pirjv.setHorizontalAlignment(SwingConstants.LEFT);\r
+ seqLimit.setFont(verdana11);\r
+ seqLimit.setHorizontalAlignment(SwingConstants.RIGHT);\r
+ seqLimit.setHorizontalTextPosition(SwingConstants.LEFT);\r
+ seqLimit.setText("Full Sequence Id");\r
+ gridLayout3.setRows(8);\r
+ smoothFont.setFont(verdana11);\r
+ smoothFont.setHorizontalAlignment(SwingConstants.RIGHT);\r
+ smoothFont.setHorizontalTextPosition(SwingConstants.LEADING);\r
+ smoothFont.setText("Smooth Font");\r
+ calcTab.setLayout(null);\r
+ autoCalculateConsCheck.setFont(new java.awt.Font("Verdana", Font.PLAIN, 11));\r
+ autoCalculateConsCheck.setText("AutoCalculate Consensus");\r
+ autoCalculateConsCheck.setBounds(new Rectangle(21, 52, 209, 23));\r
+ padGaps.setFont(new java.awt.Font("Verdana", Font.PLAIN, 11));\r
+ padGaps.setText("Pad gaps when editing");\r
+ padGaps.setBounds(new Rectangle(22, 94, 168, 23));\r
+ modellerOutput.setFont(new java.awt.Font("Verdana", Font.PLAIN, 11));\r
+ modellerOutput.setText("Use Modeller Output");\r
+ modellerOutput.setBounds(new Rectangle(228, 226, 168, 23));\r
+ jPanel2.add(fullScreen);\r
\r
jPanel2.add(annotations);\r
- jPanel2.add(conservation);\r
- jPanel2.add(quality);\r
- jPanel2.add(fullID);\r
- jPanel2.add(gapSymbolCB);\r
- jPanel2.add(jLabel1);\r
- jPanel2.add(fontNameCB);\r
- jPanel2.add(jLabel2);\r
- jPanel2.add(jLabel3);\r
- jPanel2.add(colour);\r
- jPanel2.add(fontSizeCB);\r
- jPanel2.add(fontStyleCB);\r
- jPanel2.add(identity);\r
- jPanel2.add(fullScreen);\r
+ jPanel2.add(seqLimit);\r
+ jPanel2.add(fontLabel);\r
+ jPanel2.add(smoothFont);\r
+ jPanel2.add(gapLabel);\r
+ jPanel2.add(colourLabel);\r
+ jPanel2.add(sortLabel);\r
jPanel2.add(startupCheckbox);\r
- jPanel2.add(startupFileTextfield);\r
- jPanel1.add(ok);\r
- jPanel1.add(cancel);\r
- this.add(visaulTab, java.awt.BorderLayout.CENTER);\r
- visaulTab.add(visual, "visual");\r
- visual.add(jPanel2);\r
- this.add(jPanel1, java.awt.BorderLayout.SOUTH);\r
+ visualTab.add(colour);\r
+ visualTab.add(gapSymbolCB);\r
+ visualTab.add(startupFileTextfield);\r
+ visualTab.add(sortby);\r
+ visualTab.add(fontNameCB);\r
+ visualTab.add(fontSizeCB);\r
+ visualTab.add(fontStyleCB);\r
+ visualTab.add(jPanel3);\r
+ jPanel3.add(conservation);\r
+ jPanel3.add(identity);\r
+ jPanel3.add(quality);\r
+ visualTab.add(jPanel2);\r
+ linkPanel.add(editLinkButtons, BorderLayout.EAST);\r
+ editLinkButtons.add(newLink, null);\r
+ editLinkButtons.add(editLink, null);\r
+ editLinkButtons.add(deleteLink, null);\r
+ linkPanel.add(linkScrollPane, BorderLayout.CENTER);\r
+ linkScrollPane.getViewport().add(linkPanel2, null);\r
+ linkPanel2.add(linkURLList, BorderLayout.CENTER);\r
+ linkPanel2.add(linkNameList, BorderLayout.WEST);\r
+ okCancelPanel.add(ok);\r
+ okCancelPanel.add(cancel);\r
+ this.add(tabbedPane, java.awt.BorderLayout.CENTER);\r
+\r
+ this.add(okCancelPanel, java.awt.BorderLayout.SOUTH);\r
+ jPanel1.add(serverLabel, new GridBagConstraints(0, 1, 1, 1, 0.0, 0.0\r
+ , GridBagConstraints.WEST, GridBagConstraints.NONE,\r
+ new Insets(0, 2, 4, 0), 5, 0));\r
+ jPanel1.add(portLabel, new GridBagConstraints(2, 1, 1, 1, 0.0, 0.0\r
+ , GridBagConstraints.WEST,\r
+ GridBagConstraints.NONE,\r
+ new Insets(0, 0, 4, 0), 11, 6));\r
+ connectTab.add(linkPanel, new GridBagConstraints(0, 0, 2, 1, 1.0, 1.0\r
+ , GridBagConstraints.CENTER, GridBagConstraints.BOTH,\r
+ new Insets(16, 0, 0, 12), 359, -17));\r
+ connectTab.add(jPanel1, new GridBagConstraints(0, 2, 2, 1, 1.0, 1.0\r
+ , GridBagConstraints.CENTER, GridBagConstraints.BOTH,\r
+ new Insets(21, 0, 35, 12), 4, 6));\r
+ connectTab.add(browserLabel, new GridBagConstraints(0, 1, 1, 1, 0.0, 0.0\r
+ , GridBagConstraints.WEST, GridBagConstraints.NONE,\r
+ new Insets(16, 0, 0, 0), 5, 1));\r
+ jPanel1.add(proxyPortTB, new GridBagConstraints(3, 1, 1, 1, 1.0, 0.0\r
+ , GridBagConstraints.WEST, GridBagConstraints.HORIZONTAL,\r
+ new Insets(0, 2, 4, 2), 54, 1));\r
+ jPanel1.add(proxyServerTB, new GridBagConstraints(1, 1, 1, 1, 1.0, 0.0\r
+ , GridBagConstraints.WEST, GridBagConstraints.HORIZONTAL,\r
+ new Insets(0, 2, 4, 0), 263, 1));\r
+ connectTab.add(defaultBrowser, new GridBagConstraints(1, 1, 1, 1, 1.0, 0.0\r
+ , GridBagConstraints.WEST, GridBagConstraints.HORIZONTAL,\r
+ new Insets(15, 0, 0, 15), 307, 1));\r
+\r
+\r
+ jPanel1.add(useProxy, new GridBagConstraints(0, 0, 2, 1, 0.0, 0.0\r
+ , GridBagConstraints.WEST,\r
+ GridBagConstraints.NONE,\r
+ new Insets(0, 2, 5, 185), 2,\r
+ -4));\r
DefaultListCellRenderer dlcr = new DefaultListCellRenderer();\r
- dlcr.setHorizontalAlignment(DefaultListCellRenderer.CENTER);\r
- gapSymbolCB.setRenderer(dlcr);\r
+ dlcr.setHorizontalAlignment(DefaultListCellRenderer.CENTER);\r
+ gapSymbolCB.setRenderer(dlcr);\r
+\r
+ tabbedPane.add(visualTab, "Visual");\r
+ tabbedPane.add(connectTab,"Connections");\r
+ tabbedPane.add(exportTab, "Output");\r
+ jPanel11.add(jLabel1);\r
+ jPanel11.add(blcjv);\r
+ jPanel11.add(clustaljv);\r
+ jPanel11.add(fastajv);\r
+ jPanel11.add(msfjv);\r
+ jPanel11.add(pfamjv);\r
+ jPanel11.add(pileupjv);\r
+ jPanel11.add(pirjv);\r
+ exportTab.add(modellerOutput);\r
+ tabbedPane.add(calcTab, "Editing");\r
+ calcTab.add(autoCalculateConsCheck);\r
+ calcTab.add(padGaps);\r
\r
+ exportTab.add(epsLabel);\r
+ exportTab.add(epsRendering);\r
+ exportTab.add(jPanel11);\r
}\r
\r
- JTabbedPane visaulTab = new JTabbedPane();\r
- JPanel visual = new JPanel();\r
- JButton ok = new JButton();\r
- JButton cancel = new JButton();\r
- JPanel jPanel1 = new JPanel();\r
- BorderLayout borderLayout1 = new BorderLayout();\r
- protected JCheckBox quality = new JCheckBox();\r
- JPanel jPanel2 = new JPanel();\r
- TitledBorder titledBorder1 = new TitledBorder("Open new alignment");\r
- protected JCheckBox fullID = new JCheckBox();\r
- protected JCheckBox fullScreen = new JCheckBox();\r
- protected JCheckBox conservation = new JCheckBox();\r
- protected JCheckBox identity = new JCheckBox();\r
- protected JCheckBox annotations = new JCheckBox();\r
- JLabel jLabel1 = new JLabel();\r
- protected JComboBox colour = new JComboBox();\r
- JLabel jLabel2 = new JLabel();\r
- JLabel jLabel3 = new JLabel();\r
- protected JComboBox fontSizeCB = new JComboBox();\r
- protected JComboBox fontStyleCB = new JComboBox();\r
- protected JComboBox fontNameCB = new JComboBox();\r
- protected JComboBox gapSymbolCB = new JComboBox();\r
- protected JCheckBox startupCheckbox = new JCheckBox();\r
- protected JTextField startupFileTextfield = new JTextField();\r
- public void ok_actionPerformed(ActionEvent e)\r
- {\r
+ /**\r
+ * DOCUMENT ME!\r
+ *\r
+ * @param e DOCUMENT ME!\r
+ */\r
+ public void ok_actionPerformed(ActionEvent e)\r
+ {\r
+ }\r
+\r
+ /**\r
+ * DOCUMENT ME!\r
+ *\r
+ * @param e DOCUMENT ME!\r
+ */\r
+ public void cancel_actionPerformed(ActionEvent e)\r
+ {\r
+ }\r
+\r
+ /**\r
+ * DOCUMENT ME!\r
+ *\r
+ * @param e DOCUMENT ME!\r
+ */\r
+ public void annotations_actionPerformed(ActionEvent e)\r
+ {\r
+ }\r
+\r
+\r
+ /**\r
+ * DOCUMENT ME!\r
+ */\r
+ public void startupFileTextfield_mouseClicked()\r
+ {\r
+ }\r
+\r
+\r
+ public void newLink_actionPerformed(ActionEvent e) {\r
\r
}\r
\r
- public void cancel_actionPerformed(ActionEvent e)\r
- {\r
+ public void editLink_actionPerformed(ActionEvent e) {\r
\r
}\r
\r
- public void annotations_actionPerformed(ActionEvent e)\r
- {\r
+ public void deleteLink_actionPerformed(ActionEvent e) {\r
\r
}\r
\r
- public void jCheckBox1_actionPerformed(ActionEvent e)\r
+ public void defaultBrowser_mouseClicked(MouseEvent e)\r
{\r
\r
}\r
\r
-\r
- public void startupFileTextfield_mouseClicked()\r
+ public void linkURLList_keyTyped(KeyEvent e)\r
{\r
\r
}\r
\r
+ public void useProxy_actionPerformed()\r
+ {\r
+ proxyServerTB.setEnabled(useProxy.isSelected());\r
+ proxyPortTB.setEnabled(useProxy.isSelected());\r
+ }\r
}\r
git://source.jalview.org / jalview.git / blobdiff