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[jalview.git] / src / jalview / jbgui / GPreferences.java

diff --git a/src/jalview/jbgui/GPreferences.java b/src/jalview/jbgui/GPreferences.java
index 58c7743..a1ec0a9 100755 (executable)
--- a/src/jalview/jbgui/GPreferences.java
+++ b/src/jalview/jbgui/GPreferences.java
@@ -106,6 +106,8 @@ public class GPreferences extends JPanel
   protected JCheckBox smoothFont = new JCheckBox();\r
   JPanel calcTab = new JPanel();\r
   protected JCheckBox autoCalculateConsCheck = new JCheckBox();\r
+  protected JCheckBox padGaps = new JCheckBox();\r
+  protected JCheckBox modellerOutput = new JCheckBox();\r
   /**\r
      * Creates a new GPreferences object.\r
      */\r
@@ -360,8 +362,15 @@ public class GPreferences extends JPanel
     smoothFont.setHorizontalTextPosition(SwingConstants.LEADING);\r
     smoothFont.setText("Smooth Font");\r
     calcTab.setLayout(null);\r
+    autoCalculateConsCheck.setFont(new java.awt.Font("Verdana", Font.PLAIN, 11));\r
     autoCalculateConsCheck.setText("AutoCalculate Consensus");\r
-    autoCalculateConsCheck.setBounds(new Rectangle(16, 29, 209, 23));\r
+    autoCalculateConsCheck.setBounds(new Rectangle(21, 52, 209, 23));\r
+    padGaps.setFont(new java.awt.Font("Verdana", Font.PLAIN, 11));\r
+    padGaps.setText("Pad gaps when editing");\r
+    padGaps.setBounds(new Rectangle(22, 94, 168, 23));\r
+    modellerOutput.setFont(new java.awt.Font("Verdana", Font.PLAIN, 11));\r
+    modellerOutput.setText("Use Modeller Output");\r
+    modellerOutput.setBounds(new Rectangle(228, 226, 168, 23));\r
     jPanel2.add(fullScreen);\r
 \r
     jPanel2.add(annotations);\r
@@ -444,8 +453,10 @@ public class GPreferences extends JPanel
     jPanel11.add(pfamjv);\r
     jPanel11.add(pileupjv);\r
     jPanel11.add(pirjv);\r
-    tabbedPane.add(calcTab, "Calculations");\r
+    exportTab.add(modellerOutput);\r
+    tabbedPane.add(calcTab, "Editing");\r
     calcTab.add(autoCalculateConsCheck);\r
+    calcTab.add(padGaps);\r
 \r
     exportTab.add(epsLabel);\r
     exportTab.add(epsRendering);\r